Variant report

Variant	rs1078699
Chromosome Location	chr1:155235493-155235494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:155235400-155235550	HepG2	liver:	n/a	n/a
2	POLR2A	chr1:155235357-155235937	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr1:155235398-155236778	SK-N-MC	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155211690..155216212-chr1:155231766..155235735,5	MCF-7	breast:
2	chr1:155174569..155177437-chr1:155233735..155235626,3	K562	blood:
3	chr1:155234574..155237301-chr17:58677118..58679465,2	MCF-7	breast:
4	chr1:155218456..155235751-chr1:155288837..155299195,44	MCF-7	breast:
5	chr1:155234973..155237775-chr1:155290971..155293651,2	MCF-7	breast:

No data

Variant related genes	Relation type
SCAMP3	TF binding region
ENSG00000225855	Chromatin interaction
ENSG00000160752	Chromatin interaction
ENSG00000160753	Chromatin interaction
ENSG00000177628	Chromatin interaction
ENSG00000170836	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10128085	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1045253	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1046188	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1052176	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1052177	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10752610	0.90[LWK][hapmap];1.00[YRI][hapmap]
rs1076556	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10796940	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10796943	0.82[CHB][hapmap];0.90[TSI][hapmap]
rs10796945	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs10908459	0.86[ASN][1000 genomes]
rs10908463	0.84[CHB][hapmap];0.86[MEX][hapmap]
rs10908465	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs11264343	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11264345	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11264346	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264347	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11264348	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264349	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11264351	0.90[ASN][1000 genomes]
rs11264352	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11264353	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11264354	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11264355	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11264359	0.93[ASW][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11264361	0.84[CHB][hapmap];0.80[CHD][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs11264367	0.84[CHB][hapmap]
rs11264369	0.84[CHB][hapmap]
rs11264371	0.84[CHB][hapmap]
rs11264372	0.84[CHB][hapmap]
rs11264375	0.84[CHB][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs1142287	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11577338	0.97[ASN][1000 genomes]
rs12026638	0.89[CHB][hapmap];0.85[TSI][hapmap]
rs12034326	0.87[ASN][1000 genomes]
rs12041534	0.84[CHB][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs12042020	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12044063	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12049375	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12067675	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12239114	0.84[CHB][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs12407919	0.84[ASN][1000 genomes]
rs12563994	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12723761	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12724079	0.84[CHB][hapmap]
rs12724449	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12732972	0.84[ASN][1000 genomes]
rs12748155	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12749306	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1325908	0.84[CHB][hapmap]
rs1546818	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1800438	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1800442	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1807042	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2009578	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2071053	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2072647	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2075566	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2075569	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2236863	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2236864	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2242576	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242577	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297480	0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs2361536	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2361543	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28373017	0.81[ASN][1000 genomes]
rs3020781	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34906309	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3754485	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3762272	0.87[ASN][1000 genomes]
rs3768566	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3814318	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3814319	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4043	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4472748	0.96[YRI][hapmap]
rs4620533	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4971051	0.96[YRI][hapmap]
rs4971075	0.96[YRI][hapmap]
rs5005770	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs56310840	0.84[ASN][1000 genomes]
rs59062514	0.86[ASN][1000 genomes]
rs59352002	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6672284	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7340058	0.93[LWK][hapmap];0.96[YRI][hapmap]
rs734073	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs734074	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs741756	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7520184	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7524950	0.81[AMR][1000 genomes]
rs7534795	0.91[AFR][1000 genomes]
rs7543234	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7549276	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7554780	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs762488	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8177968	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8847	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs932972	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9426886	0.83[JPT][hapmap]
rs9628662	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9729564	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
3	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
4	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
5	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
6	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
7	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
8	esv1832331	chr1:155213136-155271366	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv1826485	chr1:155214478-155264270	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
10	esv1824971	chr1:155215985-155260869	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
12	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
13	esv1832799	chr1:155226846-155261543	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
14	esv17013	chr1:155227059-155262674	Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
15	esv1797617	chr1:155228592-155264270	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
16	esv1829849	chr1:155228592-155264270	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
17	esv1832093	chr1:155230444-155253599	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
18	esv1826500	chr1:155230444-155261567	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
19	esv1831471	chr1:155230444-155261567	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
20	esv1826924	chr1:155230444-155271566	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
21	esv1830821	chr1:155230610-155265661	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
22	esv1831955	chr1:155230610-155265661	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
23	esv1826761	chr1:155230622-155262613	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
24	esv1826280	chr1:155230622-155262851	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
25	esv1832100	chr1:155230622-155269896	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
26	esv1830793	chr1:155230644-155261367	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
27	esv1827811	chr1:155230644-155271366	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
28	esv1827924	chr1:155230644-155271366	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
29	esv1826306	chr1:155232074-155261777	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
30	esv1832706	chr1:155232647-155261567	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
31	esv1831149	chr1:155233501-155252122	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
32	esv3384525	chr1:155234828-155239426	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
33	esv1829673	chr1:155235493-155261280	Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs1078699	CRNN	cis	cerebellum	SCAN
rs1078699	GBAP1	cis	Artery Tibial	GTEx
rs1078699	FDPS	cis	lymphoblastoid	seeQTL
rs1078699	FDPS	Cis_1M	lymphoblastoid	RTeQTL
rs1078699	GBA	cis	lymphoblastoid	seeQTL
rs1078699	YY1AP1	cis	cerebellum	SCAN
rs1078699	BIRC6	trans	parietal	SCAN
rs1078699	RIT1	cis	cerebellum	SCAN
rs1078699	THEM5	cis	parietal	SCAN
rs1078699	GBAP1	cis	Esophagus Mucosa	GTEx
rs1078699	LCE1C	cis	parietal	SCAN
rs1078699	RIT1	Cis_1M	lymphoblastoid	RTeQTL
rs1078699	GBAP1	cis	Thyroid	GTEx
rs1078699	THBS3	cis	Whole Blood	GTEx
rs1078699	GBAP1	cis	parietal	SCAN
rs1078699	GBA	cis	Esophagus Mucosa	GTEx
rs1078699	LAMTOR2	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155232000-155242400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:155232200-155236400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:155232200-155242200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:155232400-155241000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:155232400-155241600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:155232600-155236200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:155232600-155240600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:155232600-155240600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:155232600-155240800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:155232600-155240800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr1:155232600-155240800	Strong transcription	Gastric	stomach
12	chr1:155232600-155241000	Strong transcription	HMEC	breast
13	chr1:155232600-155241200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:155232600-155241400	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr1:155232600-155241400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:155232600-155241400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:155232600-155241600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:155232600-155241600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr1:155232600-155241600	Strong transcription	Fetal Thymus	thymus
20	chr1:155232600-155241600	Strong transcription	Osteobl	bone
21	chr1:155232600-155241800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:155232600-155241800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:155232600-155241800	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:155232600-155241800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:155232600-155241800	Strong transcription	Fetal Muscle Trunk	muscle
26	chr1:155232600-155242000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:155232600-155242000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:155232600-155242200	Weak transcription	Right Atrium	heart
29	chr1:155232800-155236200	Weak transcription	Fetal Heart	heart
30	chr1:155232800-155236600	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr1:155232800-155237800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:155232800-155237800	Weak transcription	Stomach Mucosa	stomach
33	chr1:155232800-155240000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:155232800-155240400	Strong transcription	GM12878-XiMat	blood
35	chr1:155232800-155240600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:155232800-155240600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:155232800-155240600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:155232800-155240600	Strong transcription	Brain Germinal Matrix	brain
39	chr1:155232800-155240800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr1:155232800-155240800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr1:155232800-155240800	Strong transcription	Fetal Intestine Large	intestine
42	chr1:155232800-155240800	Strong transcription	Thymus	Thymus
43	chr1:155232800-155240800	Strong transcription	HepG2	liver
44	chr1:155232800-155241000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr1:155232800-155241000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:155232800-155241000	Strong transcription	Adipose Nuclei	Adipose
47	chr1:155232800-155241000	Strong transcription	Liver	Liver
48	chr1:155232800-155241000	Strong transcription	Fetal Brain Female	brain
49	chr1:155232800-155241000	Strong transcription	Fetal Intestine Small	intestine
50	chr1:155232800-155241000	Strong transcription	Placenta Amnion	Placenta Amnion

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