Variant report

Variant	rs3762272
Chromosome Location	chr1:155261777-155261778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155260167..155262526-chr1:155270159..155272252,2	K562	blood:
2	chr1:155261117..155264004-chr1:155277463..155281311,3	MCF-7	breast:
3	chr1:155261455..155264148-chr1:155268677..155271659,2	MCF-7	breast:
4	chr1:155259968..155262452-chr1:155264201..155267047,3	MCF-7	breast:
5	chr1:155245531..155248491-chr1:155261533..155265348,4	MCF-7	breast:
6	chr1:155220670..155222238-chr1:155260191..155263130,2	MCF-7	breast:
7	chr1:155261026..155263305-chr1:155270752..155272531,2	K562	blood:
8	chr1:155259970..155262506-chr1:155264219..155265784,2	MCF-7	breast:
9	chr1:155260049..155265292-chr1:155266559..155270522,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000176444	Chromatin interaction
ENSG00000160767	Chromatin interaction
ENSG00000143627	Chromatin interaction
ENSG00000160752	Chromatin interaction
ENSG00000143630	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1046188	0.87[ASN][1000 genomes]
rs1052176	0.92[ASN][1000 genomes]
rs1052177	0.92[ASN][1000 genomes]
rs1076556	0.88[ASN][1000 genomes]
rs1078699	0.87[ASN][1000 genomes]
rs11264346	0.86[ASN][1000 genomes]
rs11264348	0.87[ASN][1000 genomes]
rs11264349	0.87[ASN][1000 genomes]
rs11264351	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11264352	0.89[ASN][1000 genomes]
rs11264353	0.89[ASN][1000 genomes]
rs11264354	0.81[ASN][1000 genomes]
rs11264355	0.85[ASN][1000 genomes]
rs11264359	0.85[CHB][hapmap]
rs1142287	0.87[ASN][1000 genomes]
rs11577338	0.88[ASN][1000 genomes]
rs12026638	0.84[CHB][hapmap]
rs12042020	0.84[ASN][1000 genomes]
rs12044063	0.86[ASN][1000 genomes]
rs12049375	0.90[ASN][1000 genomes]
rs12067675	0.86[ASN][1000 genomes]
rs12406363	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12563994	0.89[ASN][1000 genomes]
rs12724449	0.89[ASN][1000 genomes]
rs12749306	0.89[ASN][1000 genomes]
rs1546818	0.82[ASN][1000 genomes]
rs2071053	0.92[ASN][1000 genomes]
rs2072647	0.80[ASN][1000 genomes]
rs2075566	0.85[ASN][1000 genomes]
rs2236863	0.89[ASN][1000 genomes]
rs2236864	0.85[ASN][1000 genomes]
rs2242576	0.86[ASN][1000 genomes]
rs2242577	0.85[ASN][1000 genomes]
rs2297480	0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2361536	0.80[ASN][1000 genomes]
rs2361543	0.88[ASN][1000 genomes]
rs3020781	0.82[ASN][1000 genomes]
rs34906309	0.81[ASN][1000 genomes]
rs3814318	0.90[ASN][1000 genomes]
rs3814319	0.90[ASN][1000 genomes]
rs4620533	0.92[ASN][1000 genomes]
rs59062514	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs734073	0.82[ASN][1000 genomes]
rs734074	0.80[ASN][1000 genomes]
rs7520184	0.90[ASN][1000 genomes]
rs7543234	0.82[ASN][1000 genomes]
rs7549276	0.89[ASN][1000 genomes]
rs7554780	0.89[ASN][1000 genomes]
rs8177968	0.90[ASN][1000 genomes]
rs8847	0.92[ASN][1000 genomes]
rs932972	0.92[ASN][1000 genomes]
rs9426886	0.83[JPT][hapmap]
rs9729564	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
3	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
4	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
5	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
6	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
7	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
8	esv1832331	chr1:155213136-155271366	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv1826485	chr1:155214478-155264270	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
10	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
11	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
12	esv17013	chr1:155227059-155262674	Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	esv1797617	chr1:155228592-155264270	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
14	esv1829849	chr1:155228592-155264270	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
15	esv1826924	chr1:155230444-155271566	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
16	esv1830821	chr1:155230610-155265661	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
17	esv1831955	chr1:155230610-155265661	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
18	esv1826761	chr1:155230622-155262613	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
19	esv1826280	chr1:155230622-155262851	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
20	esv1832100	chr1:155230622-155269896	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
21	esv1827811	chr1:155230644-155271366	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
22	esv1827924	chr1:155230644-155271366	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
23	esv1826306	chr1:155232074-155261777	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
24	esv1831963	chr1:155239116-155267459	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
25	esv1830532	chr1:155239128-155267471	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
26	nsv872466	chr1:155259025-155269991	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155248200-155262800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:155248800-155262000	Weak transcription	Fetal Lung	lung
3	chr1:155248800-155264800	Weak transcription	Pancreas	Pancrea
4	chr1:155249000-155262800	Weak transcription	Colonic Mucosa	Colon
5	chr1:155249400-155263200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr1:155249400-155264800	Weak transcription	Brain Angular Gyrus	brain
7	chr1:155249600-155262600	Weak transcription	Fetal Brain Male	brain
8	chr1:155252600-155262600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:155253000-155262800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr1:155253800-155263000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:155254600-155263200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:155254600-155264400	Weak transcription	Spleen	Spleen
13	chr1:155255200-155263200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:155255400-155263000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:155255600-155261800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr1:155257000-155262800	Strong transcription	Fetal Intestine Small	intestine
17	chr1:155257800-155262600	Weak transcription	HepG2	liver
18	chr1:155258200-155263000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:155258400-155264600	Weak transcription	Esophagus	oesophagus
20	chr1:155258600-155261800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:155258600-155264400	Weak transcription	Gastric	stomach
22	chr1:155258800-155262800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:155258800-155263200	Weak transcription	Fetal Intestine Large	intestine
24	chr1:155259000-155263000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:155259000-155264000	Strong transcription	Liver	Liver
26	chr1:155260200-155262600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:155260400-155262600	Weak transcription	Brain Germinal Matrix	brain
28	chr1:155261200-155264800	Strong transcription	K562	blood
29	chr1:155261600-155261800	Active TSS	Brain Cingulate Gyrus	brain

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