The 2.0 version of rSNPBase

Variant report

Variant rs7554780
Chromosome Location chr1:155249698-155249699
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:77 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:155247800-155256000 Weak transcription Aorta Aorta
2 chr1:155248000-155249800 Weak transcription Stomach Mucosa stomach
3 chr1:155248200-155252200 Weak transcription Esophagus oesophagus
4 chr1:155248200-155257200 Weak transcription Thymus Thymus
5 chr1:155248200-155260600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:155248200-155261200 Weak transcription Lung lung
7 chr1:155248200-155262800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:155248400-155252200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:155248400-155253800 Weak transcription Spleen Spleen
10 chr1:155248400-155254400 Weak transcription Muscle Satellite Cultured Cells --
11 chr1:155248400-155257600 Weak transcription Placenta Amnion Placenta Amnion
12 chr1:155248400-155257800 Weak transcription Right Ventricle heart
13 chr1:155248400-155258200 Weak transcription Ovary ovary
14 chr1:155248400-155259200 Weak transcription HSMMtube muscle
15 chr1:155248400-155259600 Weak transcription Skeletal Muscle Male skeletal muscle
16 chr1:155248600-155252000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr1:155248600-155252200 Weak transcription Breast Myoepithelial Primary Cells Breast
18 chr1:155248600-155253400 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr1:155248600-155254600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr1:155248600-155255800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:155248600-155256600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr1:155248600-155257600 Weak transcription Gastric stomach
23 chr1:155248600-155258800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr1:155248800-155252000 Weak transcription Duodenum Mucosa Duodenum
25 chr1:155248800-155252000 Weak transcription Rectal Mucosa Donor 31 rectum
26 chr1:155248800-155253200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr1:155248800-155253400 Weak transcription Rectal Mucosa Donor 29 rectum
28 chr1:155248800-155253800 Weak transcription Duodenum Smooth Muscle Duodenum
29 chr1:155248800-155259400 Weak transcription Stomach Smooth Muscle stomach
30 chr1:155248800-155262000 Weak transcription Fetal Lung lung
31 chr1:155248800-155264800 Weak transcription Pancreas Pancrea
32 chr1:155249000-155252200 Weak transcription Fetal Muscle Leg muscle
33 chr1:155249000-155253800 Weak transcription Fetal Kidney kidney
34 chr1:155249000-155262800 Weak transcription Colonic Mucosa Colon
35 chr1:155249200-155251600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:155249200-155252200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
37 chr1:155249200-155255200 Weak transcription Hela-S3 cervix
38 chr1:155249200-155256200 Weak transcription Brain Substantia Nigra brain
39 chr1:155249200-155257000 Weak transcription Right Atrium heart
40 chr1:155249200-155257200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:155249200-155259400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
42 chr1:155249200-155260800 Weak transcription NHEK skin
43 chr1:155249200-155261200 Weak transcription H9 Cell Line embryonic stem cell
44 chr1:155249400-155249800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr1:155249400-155250600 Strong transcription Fetal Intestine Small intestine
46 chr1:155249400-155251600 Weak transcription Fetal Intestine Large intestine
47 chr1:155249400-155251600 Weak transcription Fetal Stomach stomach
48 chr1:155249400-155252000 Weak transcription HUES6 Cell Line embryonic stem cell
49 chr1:155249400-155252000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:155249400-155252000 Weak transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015