Variant report

Variant	rs2236863
Chromosome Location	chr1:155241361-155241362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:155241331-155241668	K562	blood:	n/a	n/a
2	POLR2A	chr1:155241230-155241874	K562	blood:	n/a	n/a
3	POLR2A	chr1:155241345-155241465	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr1:155241284-155241652	GM12891	blood:	n/a	n/a
5	POLR2A	chr1:155241094-155241441	HepG2	liver:	n/a	n/a
6	POLR2A	chr1:155241215-155241549	HepG2	liver:	n/a	n/a
7	GATA2	chr1:155241330-155241791	SH-SY5Y	brain:	n/a	n/a
8	POLR2A	chr1:155240129-155241870	PFSK-1	brain:	n/a	n/a
9	POLR2A	chr1:155241179-155243882	SK-N-MC	brain:	n/a	n/a
10	POLR2A	chr1:155241294-155241791	PANC-1	pancreas:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155176742..155181811-chr1:155241351..155243659,5	K562	blood:
2	chr1:155056804..155058815-chr1:155240733..155243389,2	K562	blood:
3	chr1:155236269..155241954-chr1:155291931..155295779,5	K562	blood:
4	chr1:155241171..155245021-chr1:155277000..155280071,7	K562	blood:
5	chr1:155212931..155218657-chr1:155240962..155244485,5	MCF-7	breast:
6	chr1:155240682..155244991-chr1:155289682..155296120,12	MCF-7	breast:
7	chr1:155237070..155244636-chr1:155291827..155295779,11	K562	blood:
8	chr1:155239314..155245036-chr1:155288379..155297041,21	MCF-7	breast:
9	chr1:155240186..155244594-chr1:155276068..155280700,10	MCF-7	breast:

No data

Variant related genes	Relation type
CLK2	TF binding region
ENSG00000225855	Chromatin interaction
ENSG00000160752	Chromatin interaction
ENSG00000169231	Chromatin interaction
ENSG00000160753	Chromatin interaction
ENSG00000173171	Chromatin interaction
ENSG00000143590	Chromatin interaction
ENSG00000177628	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10128085	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1045253	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1046188	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1052176	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1052177	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1076556	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1078699	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10796940	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10796943	0.82[CHB][hapmap];0.90[TSI][hapmap]
rs10796945	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs10908459	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10908461	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10908463	0.91[CEU][hapmap];0.84[CHB][hapmap];0.86[MEX][hapmap]
rs10908465	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs11264343	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11264345	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11264346	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264347	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11264348	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264349	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264351	0.91[ASN][1000 genomes]
rs11264352	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264353	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264354	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11264355	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11264357	0.84[AMR][1000 genomes]
rs11264359	0.87[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap]
rs11264361	0.91[CEU][hapmap];0.84[CHB][hapmap];0.80[CHD][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs11264367	0.84[CHB][hapmap]
rs11264369	0.84[CHB][hapmap]
rs11264371	0.84[CHB][hapmap]
rs11264372	0.84[CHB][hapmap]
rs11264375	0.84[CHB][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs1142287	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11577338	0.99[ASN][1000 genomes]
rs12026638	0.89[CHB][hapmap];0.85[TSI][hapmap]
rs12032720	0.81[ASN][1000 genomes]
rs12034326	0.87[ASN][1000 genomes]
rs12041534	0.84[CHB][hapmap];0.81[MEX][hapmap];0.85[TSI][hapmap]
rs12042020	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12044063	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12049375	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12067675	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12239114	0.84[CHB][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs12407919	0.84[ASN][1000 genomes]
rs12563994	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12723761	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12724079	0.84[CHB][hapmap]
rs12724449	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12732972	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12748155	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12749306	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1325908	0.84[CHB][hapmap]
rs1546818	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1800438	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1800442	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1807042	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2009578	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2071053	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2072647	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2075566	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2075569	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2236864	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2242576	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2242577	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2297480	0.91[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.97[TSI][hapmap]
rs2361536	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2361543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28373017	0.81[ASN][1000 genomes]
rs3020781	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34906309	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3754485	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3762272	0.89[ASN][1000 genomes]
rs3768566	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3814318	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3814319	0.95[ASN][1000 genomes]
rs4043	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4620533	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5005770	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs56310840	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs59062514	0.88[ASN][1000 genomes]
rs59352002	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6672284	0.85[AMR][1000 genomes]
rs734073	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs734074	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs741756	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7520184	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7524950	0.86[AMR][1000 genomes]
rs7534795	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7543234	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7549276	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554780	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs762488	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8177968	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8847	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs932972	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9426886	0.83[JPT][hapmap]
rs9628662	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9729564	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv831614	chr1:155094978-155275031	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	434 gene(s)	inside rSNPs	diseases
3	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
4	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
5	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
6	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
7	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
8	esv1832331	chr1:155213136-155271366	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv1826485	chr1:155214478-155264270	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
10	esv1824971	chr1:155215985-155260869	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
12	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
13	esv1832799	chr1:155226846-155261543	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
14	esv17013	chr1:155227059-155262674	Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
15	esv1797617	chr1:155228592-155264270	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
16	esv1829849	chr1:155228592-155264270	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
17	esv1832093	chr1:155230444-155253599	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	29 gene(s)	inside rSNPs	diseases
18	esv1826500	chr1:155230444-155261567	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
19	esv1831471	chr1:155230444-155261567	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
20	esv1826924	chr1:155230444-155271566	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
21	esv1830821	chr1:155230610-155265661	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
22	esv1831955	chr1:155230610-155265661	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
23	esv1826761	chr1:155230622-155262613	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
24	esv1826280	chr1:155230622-155262851	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
25	esv1832100	chr1:155230622-155269896	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
26	esv1830793	chr1:155230644-155261367	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
27	esv1827811	chr1:155230644-155271366	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
28	esv1827924	chr1:155230644-155271366	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
29	esv1826306	chr1:155232074-155261777	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
30	esv1832706	chr1:155232647-155261567	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
31	esv1831149	chr1:155233501-155252122	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
32	esv1829673	chr1:155235493-155261280	Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
33	esv1831963	chr1:155239116-155267459	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
34	esv1830532	chr1:155239128-155267471	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs2236863	HCN3	cis	multi-tissue	Pritchard
rs2236863	GBAP1	cis	Artery Tibial	GTEx
rs2236863	GBAP1	cis	Esophagus Mucosa	GTEx
rs2236863	YY1AP1	cis	cerebellum	SCAN
rs2236863	BIRC6	trans	parietal	SCAN
rs2236863	GBAP1	cis	Thyroid	GTEx
rs2236863	RIT1	Cis_1M	lymphoblastoid	RTeQTL
rs2236863	SPRR2A	cis	cerebellum	SCAN
rs2236863	FDPS	Cis_1M	lymphoblastoid	RTeQTL
rs2236863	THEM5	cis	parietal	SCAN
rs2236863	THBS3	cis	Whole Blood	GTEx
rs2236863	CRNN	cis	cerebellum	SCAN
rs2236863	GBAP1	cis	parietal	SCAN
rs2236863	GBA	cis	Esophagus Mucosa	GTEx
rs2236863	LCE1C	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155232000-155242400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:155232200-155242200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:155232400-155241600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:155232600-155241400	Strong transcription	H1 Cell Line	embryonic stem cell
5	chr1:155232600-155241400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:155232600-155241400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:155232600-155241600	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:155232600-155241600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:155232600-155241600	Strong transcription	Fetal Thymus	thymus
10	chr1:155232600-155241600	Strong transcription	Osteobl	bone
11	chr1:155232600-155241800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:155232600-155241800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:155232600-155241800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:155232600-155241800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:155232600-155241800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr1:155232600-155242000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:155232600-155242000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:155232600-155242200	Weak transcription	Right Atrium	heart
19	chr1:155232800-155241400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr1:155232800-155241400	Strong transcription	Primary B cells from peripheral blood	blood
21	chr1:155232800-155241400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr1:155232800-155241400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:155232800-155241400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr1:155232800-155241400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr1:155232800-155241400	Strong transcription	Placenta	Placenta
26	chr1:155232800-155241400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr1:155232800-155241400	Strong transcription	NHEK	skin
28	chr1:155232800-155241600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr1:155232800-155241600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:155232800-155241600	Strong transcription	Fetal Lung	lung
31	chr1:155232800-155241800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr1:155232800-155241800	Strong transcription	Fetal Stomach	stomach
33	chr1:155232800-155242000	Strong transcription	A549	lung
34	chr1:155233000-155241400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr1:155233000-155241400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr1:155233000-155241400	Strong transcription	Brain Anterior Caudate	brain
37	chr1:155233000-155241400	Strong transcription	Esophagus	oesophagus
38	chr1:155233000-155241400	Strong transcription	Fetal Kidney	kidney
39	chr1:155233000-155241400	Strong transcription	Stomach Smooth Muscle	stomach
40	chr1:155233000-155241400	Strong transcription	NHDF-Ad	bronchial
41	chr1:155233000-155241600	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr1:155233000-155241600	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr1:155233000-155241600	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr1:155233000-155241600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr1:155233000-155241600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr1:155233000-155241800	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr1:155233200-155241400	Strong transcription	HUVEC	blood vessel
48	chr1:155233200-155241600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr1:155233200-155241600	Strong transcription	K562	blood
50	chr1:155233400-155241600	Strong transcription	Primary T cells from cord blood	blood

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