Variant report

Variant	rs10832749
Chromosome Location	chr11:17260867-17260868
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17260848..17261450-chr11:17294076..17295035,3	MCF-7	breast:
2	chr11:17260522..17261598-chr11:17427013..17427898,6	MCF-7	breast:
3	chr11:17238056..17240462-chr11:17259257..17260894,2	K562	blood:
4	chr11:17011062..17011590-chr11:17260704..17261432,2	MCF-7	breast:
5	chr11:17008212..17008826-chr11:17260593..17261341,2	MCF-7	breast:
6	chr11:17260848..17261373-chr11:17294457..17295035,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10832730	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10832750	0.85[AFR][1000 genomes]
rs10832753	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832754	0.83[ASN][1000 genomes]
rs11024147	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11024153	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs11024186	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap]
rs11024197	0.82[ASN][1000 genomes]
rs11024199	0.87[ASN][1000 genomes]
rs11024201	1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs11024215	0.95[ASN][1000 genomes]
rs11024218	0.95[ASN][1000 genomes]
rs11024223	0.87[LWK][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap]
rs11024226	0.87[ASN][1000 genomes]
rs11024228	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12226898	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs214900	0.82[YRI][hapmap]
rs214910	0.82[YRI][hapmap]
rs214914	0.87[YRI][hapmap]
rs214925	0.82[YRI][hapmap]
rs214927	0.85[YRI][hapmap]
rs214936	0.82[YRI][hapmap]
rs214940	0.82[YRI][hapmap]
rs550667	0.82[YRI][hapmap]
rs603618	0.80[YRI][hapmap]
rs61555995	0.83[ASN][1000 genomes]
rs68175505	0.94[ASN][1000 genomes]
rs7101938	0.92[ASN][1000 genomes]
rs7111505	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127347	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7929047	0.95[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10832749	NUCB2	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17259800-17261800	Enhancers	Placenta	Placenta

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