Variant report

Variant	rs10882385
Chromosome Location	chr10:95787394-95787395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr10:95786600-95787399	T-47D	breast:	n/a	n/a
2	EP300	chr10:95786575-95787477	A549	lung:	n/a	n/a
3	BCL3	chr10:95786553-95787478	A549	lung:	n/a	n/a
4	JUND	chr10:95787013-95787423	A549	lung:	n/a	n/a
5	SP1	chr10:95786600-95787506	A549	lung:	n/a	n/a
6	NR3C1	chr10:95786795-95787414	A549	lung:	n/a	n/a
7	EP300	chr10:95786639-95787435	T-47D	breast:	n/a	n/a
8	BCL3	chr10:95786686-95787439	A549	lung:	n/a	n/a
9	JUND	chr10:95786712-95787396	T-47D	breast:	n/a	n/a
10	ATF3	chr10:95786718-95787432	A549	lung:	n/a	n/a
11	FOXA2	chr10:95786573-95787518	A549	lung:	n/a	n/a
12	GATA3	chr10:95786492-95787445	A549	lung:	n/a	n/a
13	ESR1	chr10:95786828-95787398	T-47D	breast:	n/a	n/a
14	REST	chr10:95786654-95787431	A549	lung:	n/a	n/a
15	GATA3	chr10:95786733-95787397	A549	lung:	n/a	n/a
16	SIN3AK20	chr10:95786782-95787545	MCF-7	breast:	n/a	n/a
17	JUND	chr10:95786774-95787476	A549	lung:	n/a	n/a
18	FOXA2	chr10:95786660-95787587	A549	lung:	n/a	n/a
19	TCF12	chr10:95786483-95787540	A549	lung:	n/a	n/a
20	SP1	chr10:95786543-95787489	A549	lung:	n/a	n/a
21	EP300	chr10:95786630-95787405	A549	lung:	n/a	n/a
22	GATA3	chr10:95786576-95787446	MCF-7	breast:	n/a	n/a
23	MAX	chr10:95786727-95787395	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:95759156..95760701-chr10:95786504..95788204,2	MCF-7	breast:
2	chr10:95787283..95789878-chr10:95793476..95795255,2	MCF-7	breast:
3	chr10:95766403..95768434-chr10:95786118..95787753,2	MCF-7	breast:
4	chr10:95700056..95702571-chr10:95785354..95788012,2	K562	blood:
5	chr10:95764938..95767179-chr10:95785260..95787937,2	MCF-7	breast:

No data

Variant related genes	Relation type
PLCE1	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1002636	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882382	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882383	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882386	0.85[EUR][1000 genomes]
rs10882387	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882388	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882389	0.82[EUR][1000 genomes]
rs11187768	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11187772	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187773	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11187774	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187777	0.81[EUR][1000 genomes]
rs11187778	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1157003	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1157004	0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12254065	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12257511	0.82[EUR][1000 genomes]
rs12266103	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12268744	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12356494	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1343077	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1418922	0.83[EUR][1000 genomes]
rs1418923	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17109671	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17109674	0.85[EUR][1000 genomes]
rs1925242	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1925243	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1925244	0.86[EUR][1000 genomes]
rs1935962	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935963	0.82[EUR][1000 genomes]
rs1998707	0.84[EUR][1000 genomes]
rs1998708	0.84[EUR][1000 genomes]
rs2147738	0.85[EUR][1000 genomes]
rs2147740	0.86[EUR][1000 genomes]
rs4406757	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4567381	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918042	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4918043	0.81[EUR][1000 genomes]
rs4918044	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918045	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918057	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918070	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56406227	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6583926	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7080228	0.82[EUR][1000 genomes]
rs7082337	0.86[EUR][1000 genomes]
rs7082530	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7082622	0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7082860	0.99[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7084497	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7088218	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7089080	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7096354	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7896839	0.85[EUR][1000 genomes]
rs7910822	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7917353	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7918106	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7922612	0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs992632	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
2	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
3	chr10:95786800-95787400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:95786800-95788200	Enhancers	Stomach Mucosa	stomach
5	chr10:95787000-95788800	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr10:95787200-95787800	Weak transcription	A549	lung

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