Variant report

Variant	rs10882382
Chromosome Location	chr10:95783396-95783397
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95771190..95773750-chr10:95781125..95784580,3	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1002636	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10509668	0.95[CEU][hapmap]
rs10882383	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882385	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10882386	0.95[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs10882387	0.86[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882388	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882389	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs10882391	0.83[EUR][1000 genomes]
rs11187768	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11187772	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187773	0.88[EUR][1000 genomes]
rs11187774	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11187777	0.95[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs11187778	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11187786	0.91[CEU][hapmap]
rs1157003	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1157004	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12244322	0.81[EUR][1000 genomes]
rs12254065	0.86[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12257511	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs12266103	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12268744	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12356494	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1343077	0.86[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1361810	0.95[CEU][hapmap]
rs1418922	0.87[EUR][1000 genomes]
rs1418923	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17109671	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17109674	0.95[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs17109735	0.81[EUR][1000 genomes]
rs17109746	0.86[CEU][hapmap];0.94[GIH][hapmap]
rs1925242	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925243	0.86[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925244	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs1925248	0.95[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs1935962	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1935963	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs1998707	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs1998708	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs2147738	0.91[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs2147740	0.90[EUR][1000 genomes]
rs2209442	0.95[CEU][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs3945750	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs4145083	0.86[CEU][hapmap]
rs4406757	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4567381	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918042	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918043	0.95[CEU][hapmap];0.94[GIH][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs4918044	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4918045	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4918057	0.93[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4918070	0.93[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56406227	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56989927	0.81[EUR][1000 genomes]
rs6583926	0.93[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7075952	0.95[CEU][hapmap];0.92[GIH][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs7080228	0.87[EUR][1000 genomes]
rs7082337	0.90[EUR][1000 genomes]
rs7082530	0.95[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082622	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7082860	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7084497	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7088218	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7088723	0.95[CEU][hapmap];0.94[GIH][hapmap]
rs7089080	0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7096231	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs7096354	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7896839	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs7910822	0.95[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917353	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7918106	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7922612	0.86[ASW][hapmap];0.95[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs992632	0.95[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10882382	HECTD2	cis	parietal	SCAN
rs10882382	CYP2C9	cis	parietal	SCAN
rs10882382	SORBS1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
2	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
3	chr10:95770400-95783800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:95772400-95783800	Weak transcription	Right Atrium	heart
5	chr10:95777000-95784400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:95778400-95784800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95778600-95783600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:95782800-95784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:95782800-95784200	Enhancers	Stomach Mucosa	stomach
10	chr10:95783000-95783600	Enhancers	A549	lung
11	chr10:95783000-95783800	Enhancers	Rectal Mucosa Donor 31	rectum

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