Variant report

Variant	rs11187777
Chromosome Location	chr10:95805955-95805956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1002636	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10509668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882382	0.95[CEU][hapmap];0.94[GIH][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs10882383	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882385	0.81[EUR][1000 genomes]
rs10882386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882387	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882388	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882391	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187768	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs11187772	0.87[EUR][1000 genomes]
rs11187773	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187774	0.89[EUR][1000 genomes]
rs11187778	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11187786	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1157003	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes]
rs1157004	0.88[EUR][1000 genomes]
rs12244322	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12254065	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12257511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266103	0.85[EUR][1000 genomes]
rs12268744	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs12356494	0.86[EUR][1000 genomes]
rs1343077	0.91[CEU][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1361810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1418922	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418923	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17109671	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17109674	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109735	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109746	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925242	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925243	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925248	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935962	1.00[CEU][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1935963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147738	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147740	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3945750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4145083	0.91[CEU][hapmap]
rs4406757	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4567381	0.88[EUR][1000 genomes]
rs4918042	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918043	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918044	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918045	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918057	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs4918070	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs56406227	0.86[EUR][1000 genomes]
rs56989927	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583926	1.00[CEU][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs7075952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7080228	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082337	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082530	1.00[CEU][hapmap];0.80[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7082622	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082860	1.00[CEU][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7084497	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7088218	0.88[EUR][1000 genomes]
rs7088723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7089080	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7096231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7096354	0.86[EUR][1000 genomes]
rs7896839	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910822	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917353	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7918106	1.00[CEU][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7922612	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs992632	1.00[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11187777	CC2D2B	cis	parietal	SCAN
rs11187777	INPP5K	trans	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95790000-95813200	Weak transcription	Fetal Stomach	stomach
2	chr10:95790600-95812000	Weak transcription	Ovary	ovary
3	chr10:95792000-95806000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:95792000-95813200	Weak transcription	Aorta	Aorta
5	chr10:95797600-95806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:95801600-95806000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:95802200-95809800	Weak transcription	Psoas Muscle	Psoas
8	chr10:95802400-95812600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:95803000-95806000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:95803200-95809000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:95803400-95806000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:95803400-95819800	Weak transcription	Fetal Intestine Large	intestine
13	chr10:95803600-95815400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr10:95804000-95809400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:95804000-95812600	Weak transcription	Osteobl	bone
16	chr10:95804400-95806400	Strong transcription	Fetal Intestine Small	intestine
17	chr10:95804400-95812800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:95805600-95812800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:95805800-95806400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:95805800-95806400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr10:95805800-95806400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:95805800-95806400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr10:95805800-95806600	Enhancers	Fetal Muscle Leg	muscle
24	chr10:95805800-95806600	Enhancers	A549	lung
25	chr10:95805800-95807600	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links