Variant report

Variant	rs11187774
Chromosome Location	chr10:95799304-95799305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1002636	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10509668	0.82[EUR][1000 genomes]
rs10882382	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10882383	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882385	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882386	0.92[EUR][1000 genomes]
rs10882387	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882388	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882389	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882391	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11187768	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187772	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187773	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187777	0.89[EUR][1000 genomes]
rs11187778	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187786	0.80[EUR][1000 genomes]
rs1157003	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1157004	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12244322	0.85[EUR][1000 genomes]
rs12254065	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12257511	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12266103	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12268744	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12356494	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1343077	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1361810	0.82[EUR][1000 genomes]
rs1418922	0.91[EUR][1000 genomes]
rs1418923	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17109671	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17109674	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17109735	0.84[EUR][1000 genomes]
rs1925242	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925243	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1925244	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1925248	0.84[EUR][1000 genomes]
rs1935962	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1935963	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1998707	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1998708	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2147738	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2147740	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2209442	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3945750	0.84[EUR][1000 genomes]
rs4145083	0.81[EUR][1000 genomes]
rs4406757	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4567381	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4918042	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918043	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4918044	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4918045	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4918057	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4918070	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56406227	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56989927	0.84[EUR][1000 genomes]
rs6583926	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7075952	0.85[EUR][1000 genomes]
rs7080228	0.90[EUR][1000 genomes]
rs7082337	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7082530	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7082622	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7082860	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7084497	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7088218	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7088723	0.82[EUR][1000 genomes]
rs7089080	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7096231	0.84[EUR][1000 genomes]
rs7096354	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7896839	0.92[EUR][1000 genomes]
rs7910822	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7917353	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7918106	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7922612	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs992632	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95790000-95813200	Weak transcription	Fetal Stomach	stomach
3	chr10:95790200-95801400	Weak transcription	Psoas Muscle	Psoas
4	chr10:95790600-95812000	Weak transcription	Ovary	ovary
5	chr10:95790800-95801400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:95791400-95801000	Weak transcription	Adipose Nuclei	Adipose
7	chr10:95791600-95803400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:95792000-95800000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:95792000-95800200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:95792000-95801200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:95792000-95801400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:95792000-95806000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:95792000-95813200	Weak transcription	Aorta	Aorta
14	chr10:95792200-95800200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:95792400-95801200	Weak transcription	Fetal Intestine Large	intestine
16	chr10:95796200-95805800	Weak transcription	Pancreas	Pancrea
17	chr10:95796600-95802200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:95797600-95806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr10:95797800-95803000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:95798000-95799400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:95798000-95801200	Weak transcription	Fetal Kidney	kidney
22	chr10:95798000-95802000	Weak transcription	Gastric	stomach
23	chr10:95798200-95800000	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:95798200-95801200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:95798200-95801200	Weak transcription	Hela-S3	cervix
26	chr10:95798200-95801200	Weak transcription	HSMM	muscle
27	chr10:95798200-95801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:95798400-95799800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr10:95798400-95800200	Enhancers	A549	lung
30	chr10:95798400-95800800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:95798400-95801200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:95798400-95801200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:95798400-95801200	Weak transcription	Osteobl	bone
34	chr10:95798400-95801400	Weak transcription	HSMMtube	muscle
35	chr10:95798400-95801600	Weak transcription	NH-A	brain
36	chr10:95799200-95800600	Strong transcription	Fetal Intestine Small	intestine

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