Variant report

Variant	rs56406227
Chromosome Location	chr10:95829022-95829023
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1002636	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509668	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10882382	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10882383	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882385	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10882386	0.85[EUR][1000 genomes]
rs10882387	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882388	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882389	0.87[EUR][1000 genomes]
rs10882391	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11187768	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187772	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11187773	0.85[EUR][1000 genomes]
rs11187774	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187777	0.86[EUR][1000 genomes]
rs11187778	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187786	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1157003	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1157004	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12244322	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12254065	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12257511	0.87[EUR][1000 genomes]
rs12266103	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12268744	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12356494	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1343077	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1361810	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1418922	0.86[EUR][1000 genomes]
rs1418923	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109671	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109674	0.85[EUR][1000 genomes]
rs17109735	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17109746	0.86[EUR][1000 genomes]
rs1925242	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925243	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1925244	0.83[EUR][1000 genomes]
rs1925248	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1935962	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1935963	0.87[EUR][1000 genomes]
rs1998707	0.85[EUR][1000 genomes]
rs1998708	0.85[EUR][1000 genomes]
rs2147738	0.85[EUR][1000 genomes]
rs2147740	0.83[EUR][1000 genomes]
rs2209442	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3945750	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4145083	0.87[EUR][1000 genomes]
rs4406757	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4567381	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918042	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918043	0.86[EUR][1000 genomes]
rs4918044	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918045	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918057	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918070	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56989927	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6583926	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7075952	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7080228	0.87[EUR][1000 genomes]
rs7082337	0.83[EUR][1000 genomes]
rs7082530	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7082622	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7082860	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7084497	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7088218	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088723	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7089080	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7096231	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7096354	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896839	0.85[EUR][1000 genomes]
rs7910822	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917353	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7918106	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7922612	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs992632	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947687	chr10:95827787-95832796	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95814400-95836400	Weak transcription	Psoas Muscle	Psoas
2	chr10:95820400-95832800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:95823000-95836400	Weak transcription	Aorta	Aorta
4	chr10:95823200-95830800	Enhancers	Fetal Intestine Small	intestine
5	chr10:95823600-95830400	Enhancers	Fetal Intestine Large	intestine
6	chr10:95825200-95835400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:95825600-95829600	Weak transcription	Osteobl	bone
8	chr10:95825800-95836000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:95825800-95850400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:95827000-95829600	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:95827000-95835200	Weak transcription	A549	lung
12	chr10:95827800-95831600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:95828600-95829200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr10:95829000-95829600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr10:95829000-95829800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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