Variant report

Variant	rs10882383
Chromosome Location	chr10:95787096-95787097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:71)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:71 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ETS1	chr10:95786788-95787313	A549	lung:	n/a	n/a
2	ZBTB33	chr10:95786726-95787363	A549	lung:	n/a	n/a
3	NR3C1	chr10:95786841-95787243	A549	lung:	n/a	n/a
4	JUND	chr10:95786600-95787399	T-47D	breast:	n/a	n/a
5	EP300	chr10:95786575-95787477	A549	lung:	n/a	n/a
6	BCL3	chr10:95786553-95787478	A549	lung:	n/a	n/a
7	SIN3AK20	chr10:95786792-95787320	MCF-7	breast:	n/a	n/a
8	GABPA	chr10:95786885-95787290	A549	lung:	n/a	n/a
9	JUND	chr10:95787013-95787423	A549	lung:	n/a	n/a
10	TEAD4	chr10:95786665-95787389	A549	lung:	n/a	n/a
11	SIN3AK20	chr10:95786854-95787351	A549	lung:	n/a	n/a
12	SP1	chr10:95786600-95787506	A549	lung:	n/a	n/a
13	NR3C1	chr10:95786795-95787414	A549	lung:	n/a	n/a
14	USF1	chr10:95786795-95787344	A549	lung:	n/a	n/a
15	ELF1	chr10:95786844-95787328	A549	lung:	n/a	n/a
16	EP300	chr10:95786639-95787435	T-47D	breast:	n/a	n/a
17	BCL3	chr10:95786686-95787439	A549	lung:	n/a	n/a
18	EP300	chr10:95786798-95787380	T-47D	breast:	n/a	n/a
19	ESR1	chr10:95786837-95787356	T-47D	breast:	n/a	n/a
20	GABPA	chr10:95786729-95787327	A549	lung:	n/a	n/a
21	ESR1	chr10:95786859-95787279	T-47D	breast:	n/a	n/a
22	JUND	chr10:95786712-95787396	T-47D	breast:	n/a	n/a
23	TEAD4	chr10:95786769-95787384	A549	lung:	n/a	n/a
24	JUND	chr10:95786761-95787236	MCF-7	breast:	n/a	n/a
25	ATF3	chr10:95786718-95787432	A549	lung:	n/a	n/a
26	FOXA2	chr10:95786573-95787518	A549	lung:	n/a	n/a
27	FOSL2	chr10:95786615-95787334	A549	lung:	n/a	n/a
28	GATA3	chr10:95786492-95787445	A549	lung:	n/a	n/a
29	ESR1	chr10:95786828-95787398	T-47D	breast:	n/a	n/a
30	REST	chr10:95786654-95787431	A549	lung:	n/a	n/a
31	GATA3	chr10:95786825-95787205	MCF-7	breast:	n/a	n/a
32	NR3C1	chr10:95786872-95787290	A549	lung:	n/a	n/a
33	FOSL2	chr10:95786956-95787334	MCF-7	breast:	n/a	n/a
34	GATA3	chr10:95786733-95787397	A549	lung:	n/a	n/a
35	ESR1	chr10:95786774-95787336	T-47D	breast:	n/a	n/a
36	MAX	chr10:95786741-95787355	A549	lung:	n/a	n/a
37	EP300	chr10:95786779-95787273	MCF-7	breast:	n/a	n/a
38	SIN3AK20	chr10:95786782-95787545	MCF-7	breast:	n/a	n/a
39	GATA3	chr10:95786725-95787368	T-47D	breast:	n/a	n/a
40	CEBPB	chr10:95786740-95787377	A549	lung:	n/a	n/a
41	HDAC2	chr10:95786757-95787376	MCF-7	breast:	n/a	n/a
42	EP300	chr10:95786885-95787259	MCF-7	breast:	n/a	n/a
43	JUND	chr10:95786774-95787476	A549	lung:	n/a	n/a
44	FOXA2	chr10:95786660-95787587	A549	lung:	n/a	n/a
45	GATA3	chr10:95786780-95787220	MCF-7	breast:	n/a	n/a
46	TCF12	chr10:95786483-95787540	A549	lung:	n/a	n/a
47	ZNF217	chr10:95786866-95787233	MCF-7	breast:	n/a	n/a
48	ATF3	chr10:95786774-95787356	A549	lung:	n/a	n/a
49	ELF1	chr10:95786806-95787283	MCF-7	breast:	n/a	n/a
50	FOXA1	chr10:95786709-95787354	T-47D	breast:	n/a	chr10:95787019-95787034

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:95759156..95760701-chr10:95786504..95788204,2	MCF-7	breast:
2	chr10:95766403..95768434-chr10:95786118..95787753,2	MCF-7	breast:
3	chr10:95700056..95702571-chr10:95785354..95788012,2	K562	blood:
4	chr10:95780403..95782775-chr10:95784195..95787196,3	MCF-7	breast:
5	chr10:95764938..95767179-chr10:95785260..95787937,2	MCF-7	breast:

No data

Variant related genes	Relation type
PLCE1	TF binding region

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs1002636	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509668	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10882382	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882385	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882386	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882387	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882388	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882389	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882391	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11187768	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11187772	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11187773	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187774	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11187777	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11187778	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187786	0.81[AMR][1000 genomes]
rs1157003	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1157004	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12244322	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12254065	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12257511	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12266103	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12268744	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12356494	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1343077	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1361810	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1418922	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1418923	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17109671	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109674	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17109735	0.84[EUR][1000 genomes]
rs1925242	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925243	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925244	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925248	0.84[EUR][1000 genomes]
rs1935962	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935963	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1998707	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1998708	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2147738	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2147740	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2209442	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3945750	0.84[EUR][1000 genomes]
rs4145083	0.80[EUR][1000 genomes]
rs4406757	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4567381	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918042	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4918043	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918044	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918045	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4918057	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4918070	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56406227	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56989927	0.84[EUR][1000 genomes]
rs6583926	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7075952	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7080228	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7082337	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7082530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082622	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7082860	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7084497	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7088218	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7088723	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7089080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7096231	0.84[EUR][1000 genomes]
rs7096354	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896839	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7910822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7917353	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7918106	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7922612	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs992632	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95767800-95789800	Weak transcription	Pancreas	Pancrea
2	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
3	chr10:95786400-95787200	Active TSS	A549	lung
4	chr10:95786800-95787400	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:95786800-95788200	Enhancers	Stomach Mucosa	stomach
6	chr10:95787000-95788800	ZNF genes & repeats	Fetal Muscle Leg	muscle

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