Variant report

Variant	rs1998707
Chromosome Location	chr10:95798374-95798375
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1002636	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10509668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882382	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10882383	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10882385	0.84[EUR][1000 genomes]
rs10882386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882387	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882388	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10882389	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882391	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187768	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187772	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187773	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187774	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11187777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187778	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11187786	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1157003	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1157004	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12244322	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12254065	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12257511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12266103	0.83[EUR][1000 genomes]
rs12268744	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12356494	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1343077	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs1361810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1418922	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418923	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17109671	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17109674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109735	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17109746	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1925242	1.00[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925243	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1925244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935962	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1935963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147738	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2147740	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3945750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4145083	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs4406757	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4567381	0.87[EUR][1000 genomes]
rs4918042	1.00[CEU][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4918043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918044	1.00[CEU][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918045	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4918057	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs4918070	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs56406227	0.85[EUR][1000 genomes]
rs56989927	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583926	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs7075952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7080228	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082337	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082530	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7082622	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7082860	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7084497	1.00[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7088218	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7088723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7089080	1.00[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7096231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7096354	0.85[EUR][1000 genomes]
rs7896839	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910822	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7917353	1.00[CEU][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7918106	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7922612	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs992632	1.00[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95770000-95800800	Weak transcription	Colonic Mucosa	Colon
2	chr10:95790000-95813200	Weak transcription	Fetal Stomach	stomach
3	chr10:95790200-95801400	Weak transcription	Psoas Muscle	Psoas
4	chr10:95790600-95812000	Weak transcription	Ovary	ovary
5	chr10:95790800-95801400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:95791400-95801000	Weak transcription	Adipose Nuclei	Adipose
7	chr10:95791600-95803400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:95792000-95800000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:95792000-95800200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:95792000-95801200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:95792000-95801400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:95792000-95806000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:95792000-95813200	Weak transcription	Aorta	Aorta
14	chr10:95792200-95800200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:95792400-95801200	Weak transcription	Fetal Intestine Large	intestine
16	chr10:95795400-95798400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:95796000-95798400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:95796200-95805800	Weak transcription	Pancreas	Pancrea
19	chr10:95796400-95798400	Flanking Active TSS	A549	lung
20	chr10:95796600-95802200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:95797200-95798400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:95797200-95798400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:95797200-95798400	Enhancers	NH-A	brain
24	chr10:95797400-95798400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:95797400-95798400	Enhancers	Osteobl	bone
26	chr10:95797600-95798400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:95797600-95798400	Enhancers	Fetal Heart	heart
28	chr10:95797600-95806000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:95797800-95798400	Genic enhancers	Fetal Intestine Small	intestine
30	chr10:95797800-95798400	Enhancers	HSMMtube	muscle
31	chr10:95797800-95803000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:95798000-95798400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr10:95798000-95799400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:95798000-95801200	Weak transcription	Fetal Kidney	kidney
35	chr10:95798000-95802000	Weak transcription	Gastric	stomach
36	chr10:95798200-95800000	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:95798200-95801200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:95798200-95801200	Weak transcription	Hela-S3	cervix
39	chr10:95798200-95801200	Weak transcription	HSMM	muscle
40	chr10:95798200-95801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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