Variant report

Variant	rs10929326
Chromosome Location	chr2:234151045-234151046
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10164737	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10165561	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10167613	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10178603	0.82[EUR][1000 genomes]
rs10186850	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10187752	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10187822	0.82[EUR][1000 genomes]
rs10192702	0.82[EUR][1000 genomes]
rs10195395	0.82[EUR][1000 genomes]
rs10196794	0.88[EUR][1000 genomes]
rs10199278	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10203952	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10206299	0.90[EUR][1000 genomes]
rs10210302	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1045100	0.82[EUR][1000 genomes]
rs10929322	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10929325	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11679791	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11680089	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11680130	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11687982	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11688431	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11690131	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11694081	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12162308	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12692254	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994971	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12994997	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13003866	0.88[EUR][1000 genomes]
rs13009506	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13391356	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13411660	0.81[EUR][1000 genomes]
rs13418066	0.89[EUR][1000 genomes]
rs1596017	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2119505	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2241878	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2241879	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2241880	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289472	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2289474	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28454240	0.89[EUR][1000 genomes]
rs2880080	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34123137	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34701569	0.87[EUR][1000 genomes]
rs35300242	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36001488	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3792108	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3792109	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3792111	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3792112	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3816234	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3828309	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55835501	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56049444	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56227616	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6431654	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6431660	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6431661	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6705964	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6708373	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6738490	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6745825	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6752107	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7559194	0.81[EUR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234138000-234151200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:234138400-234151200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr2:234145600-234151400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:234145600-234152000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:234145600-234153600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:234146000-234151200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr2:234147600-234151400	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:234148400-234151200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:234148400-234152200	Enhancers	Primary B cells from cord blood	blood
10	chr2:234148600-234151200	Enhancers	Fetal Thymus	thymus
11	chr2:234149200-234151400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr2:234149200-234151400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:234149400-234151200	Enhancers	NHEK	skin
14	chr2:234149400-234152600	Enhancers	Stomach Mucosa	stomach
15	chr2:234149400-234153600	Enhancers	K562	blood
16	chr2:234149800-234151200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr2:234149800-234151200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:234149800-234151200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr2:234149800-234151200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:234149800-234151200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr2:234149800-234151400	Enhancers	Primary T cells from cord blood	blood
22	chr2:234150000-234152000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr2:234150400-234151200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr2:234150400-234151200	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr2:234150400-234151400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr2:234150400-234153000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:234150600-234151200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:234150600-234151200	Enhancers	Colonic Mucosa	Colon
29	chr2:234150600-234151200	Enhancers	Left Ventricle	heart
30	chr2:234150600-234151400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr2:234150600-234151400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr2:234150600-234151400	Enhancers	HSMM	muscle
33	chr2:234150600-234151400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr2:234150800-234151200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr2:234150800-234151200	Enhancers	A549	lung
36	chr2:234150800-234151400	Enhancers	HSMMtube	muscle
37	chr2:234150800-234153000	Weak transcription	HMEC	breast
38	chr2:234150800-234153200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr2:234151000-234151200	Enhancers	Primary hematopoietic stem cells	blood
40	chr2:234151000-234151200	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr2:234151000-234151400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr2:234151000-234151400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:234151000-234151400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr2:234151000-234151400	Flanking Active TSS	GM12878-XiMat	blood
45	chr2:234151000-234151400	Enhancers	NH-A	brain
46	chr2:234151000-234152000	Weak transcription	Spleen	Spleen
47	chr2:234151000-234153200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr2:234151000-234153200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:234151000-234153200	Weak transcription	Hela-S3	cervix
50	chr2:234151000-234155200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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