Variant report

Variant	rs6705964
Chromosome Location	chr2:234163683-234163684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234163205..234166188-chr2:234263952..234265730,2	MCF-7	breast:
2	chr2:234161754..234164546-chr2:234176635..234178201,2	K562	blood:
3	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
4	chr2:234162476..234164619-chr2:234172094..234174882,2	MCF-7	breast:
5	chr2:234161285..234164496-chr2:234179412..234182858,4	MCF-7	breast:
6	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:
7	chr2:234163227..234166174-chr2:234179109..234182042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10164737	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165561	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167613	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10178603	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10186850	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10187752	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10187822	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10192579	0.81[ASN][1000 genomes]
rs10192702	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195395	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10196794	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10199278	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203952	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10206299	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210302	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1045100	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10929322	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929325	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10929326	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679791	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11680089	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680130	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687982	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11688431	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690131	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11694081	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12162308	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692250	0.81[ASN][1000 genomes]
rs12692254	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994971	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994997	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003866	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009506	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391356	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411660	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13412102	0.81[ASN][1000 genomes]
rs13418066	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1596017	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119505	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241878	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241879	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241880	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289472	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289474	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454240	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2880080	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34123137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34701569	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35300242	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001488	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792106	0.84[ASN][1000 genomes]
rs3792108	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792109	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792111	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792112	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816234	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828309	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835501	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56049444	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56227616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6431654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431660	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431661	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708373	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745825	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752107	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559194	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234160000-234163800	Active TSS	GM12878-XiMat	blood
2	chr2:234161400-234164400	Weak transcription	Placenta	Placenta
3	chr2:234161400-234165200	Weak transcription	Ovary	ovary
4	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
5	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:234161600-234165000	Enhancers	Colon Smooth Muscle	Colon
9	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
10	chr2:234161800-234164000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr2:234161800-234164200	Genic enhancers	Primary T cells fromperipheralblood	blood
12	chr2:234161800-234164200	Enhancers	HUVEC	blood vessel
13	chr2:234161800-234164400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:234161800-234164600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:234161800-234164600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr2:234161800-234166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:234161800-234166200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
20	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr2:234162000-234163800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:234162000-234164000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:234162000-234164000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr2:234162000-234164200	Genic enhancers	Fetal Brain Female	brain
25	chr2:234162000-234164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:234162000-234165000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr2:234162000-234165800	Weak transcription	Colonic Mucosa	Colon
28	chr2:234162200-234164000	Weak transcription	NHDF-Ad	bronchial
29	chr2:234162200-234165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr2:234162200-234165000	Weak transcription	Left Ventricle	heart
31	chr2:234162200-234167000	Weak transcription	Lung	lung
32	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr2:234162400-234163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr2:234162400-234164000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr2:234162400-234164200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
38	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:234162600-234164400	Genic enhancers	Primary T cells from cord blood	blood
43	chr2:234162600-234164400	Weak transcription	Adipose Nuclei	Adipose
44	chr2:234162600-234164600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr2:234162600-234165000	Weak transcription	Primary B cells from cord blood	blood
46	chr2:234162600-234165000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr2:234162600-234192400	Strong transcription	Osteobl	bone
50	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood

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