Variant report

Variant	rs12692254
Chromosome Location	chr2:234161211-234161212
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:233738643..233740986-chr2:234158854..234161597,2	MCF-7	breast:
2	chr2:234160919..234163001-chr2:234739570..234741620,2	MCF-7	breast:
3	chr2:233720253..233722044-chr2:234158922..234161619,2	MCF-7	breast:
4	chr2:234159356..234161467-chr2:234246206..234249085,2	MCF-7	breast:
5	chr2:234160002..234161727-chr2:234263204..234265213,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182600	Chromatin interaction
ENSG00000130561	Chromatin interaction
ENSG00000243637	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10164737	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165561	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167613	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10178603	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10186850	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10187752	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10187822	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10192579	0.81[ASN][1000 genomes]
rs10192702	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195395	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10196794	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10199278	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203952	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10206299	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210302	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1045100	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10929322	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929325	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10929326	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679791	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11680089	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680130	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687982	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11688431	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690131	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11694081	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12162308	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692250	0.81[ASN][1000 genomes]
rs12994971	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994997	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003866	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009506	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391356	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411660	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13412102	0.81[ASN][1000 genomes]
rs13418066	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1596017	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119505	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241878	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241879	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241880	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289472	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289474	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454240	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2880080	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34123137	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34701569	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35300242	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001488	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792106	0.84[ASN][1000 genomes]
rs3792108	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792109	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792111	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792112	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816234	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828309	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835501	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56049444	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56227616	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6431654	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431660	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431661	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705964	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708373	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745825	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752107	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559194	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234159800-234161400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:234159800-234161400	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr2:234159800-234161400	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr2:234159800-234161400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr2:234159800-234161400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:234159800-234161400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:234159800-234161400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:234159800-234161400	Active TSS	Muscle Satellite Cultured Cells	--
9	chr2:234159800-234161400	Active TSS	Fetal Kidney	kidney
10	chr2:234159800-234161400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr2:234159800-234161400	Active TSS	Ovary	ovary
12	chr2:234159800-234161400	Active TSS	Rectal Smooth Muscle	rectum
13	chr2:234159800-234161400	Active TSS	A549	lung
14	chr2:234159800-234161400	Active TSS	HSMMtube	muscle
15	chr2:234159800-234161600	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr2:234159800-234161600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:234159800-234161600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:234159800-234161600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:234159800-234161600	Active TSS	Right Atrium	heart
20	chr2:234159800-234161600	Active TSS	Stomach Mucosa	stomach
21	chr2:234159800-234161600	Active TSS	NHDF-Ad	bronchial
22	chr2:234159800-234161600	Active TSS	NHLF	lung
23	chr2:234159800-234161800	Active TSS	H9 Cell Line	embryonic stem cell
24	chr2:234159800-234161800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:234159800-234161800	Active TSS	Fetal Intestine Large	intestine
26	chr2:234159800-234161800	Active TSS	Psoas Muscle	Psoas
27	chr2:234160000-234161400	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr2:234160000-234161400	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr2:234160000-234161400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr2:234160000-234161400	Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr2:234160000-234161400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr2:234160000-234161400	Active TSS	Fetal Intestine Small	intestine
33	chr2:234160000-234161400	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr2:234160000-234161400	Active TSS	HMEC	breast
35	chr2:234160000-234161400	Active TSS	HSMM	muscle
36	chr2:234160000-234161400	Active TSS	NH-A	brain
37	chr2:234160000-234161400	Active TSS	NHEK	skin
38	chr2:234160000-234161400	Active TSS	Osteobl	bone
39	chr2:234160000-234161600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr2:234160000-234161600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:234160000-234161600	Active TSS	Aorta	Aorta
42	chr2:234160000-234161600	Active TSS	Hela-S3	cervix
43	chr2:234160000-234161800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr2:234160000-234163800	Active TSS	GM12878-XiMat	blood
45	chr2:234160200-234161400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr2:234160200-234161400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:234160200-234161400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr2:234160200-234161400	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr2:234160200-234161400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr2:234160200-234161400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

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