Variant report

Variant	rs6431661
Chromosome Location	chr2:234167421-234167422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234166526..234169177-chr2:234198735..234200810,2	MCF-7	breast:
2	chr2:234166864..234169330-chr2:234170914..234172883,2	K562	blood:
3	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:
4	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
5	chr2:234158513..234163302-chr2:234165991..234171009,7	K562	blood:
6	chr2:234167250..234169129-chr2:234262893..234264646,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243637	Chromatin interaction
ENSG00000077044	Chromatin interaction
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10164737	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165561	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167613	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10178603	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10186850	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10187752	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10187822	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10192579	0.81[ASN][1000 genomes]
rs10192702	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195395	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10196794	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10199278	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203952	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10206299	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210302	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1045100	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10929322	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929325	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10929326	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679791	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11680089	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680130	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687982	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11688431	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690131	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11694081	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12162308	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692250	0.81[ASN][1000 genomes]
rs12692254	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994971	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994997	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003866	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009506	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391356	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411660	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13412102	0.81[ASN][1000 genomes]
rs13418066	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1596017	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119505	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241878	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241879	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241880	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289472	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289474	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454240	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2880080	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34123137	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34701569	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35300242	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001488	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792106	0.84[ASN][1000 genomes]
rs3792108	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792109	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792111	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792112	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816234	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828309	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835501	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56049444	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56227616	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6431654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431660	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705964	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708373	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738490	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6745825	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752107	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559194	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
5	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
7	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
10	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
11	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr2:234162600-234192400	Strong transcription	Osteobl	bone
18	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr2:234162600-234205200	Strong transcription	Fetal Muscle Leg	muscle
20	chr2:234162800-234167800	Weak transcription	Brain Hippocampus Middle	brain
21	chr2:234162800-234170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr2:234162800-234194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:234162800-234197000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:234162800-234205600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:234163000-234170200	Strong transcription	Primary B cells from peripheral blood	blood
26	chr2:234163000-234170800	Weak transcription	Fetal Heart	heart
27	chr2:234163000-234175600	Strong transcription	Fetal Thymus	thymus
28	chr2:234163000-234176200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:234163000-234192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:234163000-234192200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr2:234163200-234168000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:234163200-234169000	Weak transcription	Pancreas	Pancrea
33	chr2:234163200-234169400	Weak transcription	NHLF	lung
34	chr2:234163200-234175600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr2:234163200-234177800	Strong transcription	NHEK	skin
36	chr2:234163200-234188000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr2:234163200-234188800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr2:234163200-234206000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:234163400-234167600	Weak transcription	Psoas Muscle	Psoas
40	chr2:234163800-234188600	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr2:234163800-234189000	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr2:234164000-234175400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr2:234164000-234175600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:234164000-234177400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:234164200-234168200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr2:234164200-234169000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr2:234164200-234169400	Strong transcription	HSMM	muscle
48	chr2:234164200-234176800	Strong transcription	Fetal Brain Female	brain
49	chr2:234164200-234178800	Strong transcription	Fetal Lung	lung
50	chr2:234164200-234205400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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