Variant report

Variant	rs11690131
Chromosome Location	chr2:234148383-234148384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10164737	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10165561	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10167613	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10178603	0.86[ASN][1000 genomes]
rs10186850	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10187752	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10187822	0.86[ASN][1000 genomes]
rs10192579	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10192702	0.87[ASN][1000 genomes]
rs10195395	0.86[ASN][1000 genomes]
rs10196794	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10199278	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10203952	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10206299	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10210302	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1045100	0.86[ASN][1000 genomes]
rs10929322	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10929325	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10929326	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679791	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11680089	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11680130	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11687982	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11688431	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11694081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12162308	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12692250	0.88[ASN][1000 genomes]
rs12692254	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12994971	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12994997	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13003866	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13009506	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13391356	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13411660	0.87[ASN][1000 genomes]
rs13412102	0.88[ASN][1000 genomes]
rs13418066	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1596017	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2119505	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2241878	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2241879	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2241880	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2289472	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2289474	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28454240	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2880080	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34123137	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34701569	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35300242	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36001488	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3792106	0.83[ASN][1000 genomes]
rs3792108	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3792109	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3792111	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3792112	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3816234	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3828309	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55835501	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56049444	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56227616	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6431654	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6431660	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6431661	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6705964	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6708373	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6738490	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6745825	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6752107	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7559194	0.87[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234138000-234151200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:234138400-234151200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr2:234140000-234148400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:234143200-234148400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr2:234143400-234148400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr2:234143800-234148600	Weak transcription	Fetal Thymus	thymus
7	chr2:234144200-234149400	Weak transcription	Stomach Mucosa	stomach
8	chr2:234144600-234150400	Weak transcription	Esophagus	oesophagus
9	chr2:234145400-234150600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:234145600-234149400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:234145600-234151400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr2:234145600-234152000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:234145600-234153600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr2:234146000-234149400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:234146000-234149400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr2:234146000-234151200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr2:234146200-234149400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr2:234146200-234149400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr2:234146600-234148600	Weak transcription	Spleen	Spleen
20	chr2:234146600-234149400	Enhancers	Primary T cells from cord blood	blood
21	chr2:234147000-234149400	Weak transcription	K562	blood
22	chr2:234147600-234151400	Enhancers	Primary B cells from peripheral blood	blood
23	chr2:234148000-234148800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr2:234148000-234149600	Enhancers	GM12878-XiMat	blood
25	chr2:234148200-234148400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr2:234148200-234148400	Enhancers	Thymus	Thymus
27	chr2:234148200-234149000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:234148200-234149200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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