Variant report

Variant	rs6745825
Chromosome Location	chr2:234162153-234162154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234161754..234164546-chr2:234176635..234178201,2	K562	blood:
2	chr2:234160919..234163001-chr2:234739570..234741620,2	MCF-7	breast:
3	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
4	chr2:234161380..234162946-chr2:234262320..234263991,2	MCF-7	breast:
5	chr2:234161285..234164496-chr2:234179412..234182858,4	MCF-7	breast:
6	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:

Variant related genes	Relation type
ENSG00000077044	Chromatin interaction
ENSG00000243637	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10164737	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10165561	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10167613	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10178603	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10186850	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10187752	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10187822	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10192579	0.81[ASN][1000 genomes]
rs10192702	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195395	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10196794	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10199278	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203952	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10206299	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210302	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1045100	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10929322	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10929325	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10929326	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11679791	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11680089	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11680130	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11687982	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11688431	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690131	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11694081	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12162308	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692250	0.81[ASN][1000 genomes]
rs12692254	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994971	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994997	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13003866	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13009506	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13391356	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13411660	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13412102	0.81[ASN][1000 genomes]
rs13418066	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1596017	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119505	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2241878	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2241879	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241880	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289472	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2289474	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454240	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2880080	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34123137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34701569	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35300242	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001488	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792106	0.84[ASN][1000 genomes]
rs3792108	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792109	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792111	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792112	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816234	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828309	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55835501	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56049444	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56227616	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6431654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431660	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431661	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6705964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708373	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6752107	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7559194	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234160000-234163800	Active TSS	GM12878-XiMat	blood
2	chr2:234161000-234163000	Enhancers	Fetal Heart	heart
3	chr2:234161200-234162400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:234161200-234162400	Enhancers	Fetal Brain Male	brain
5	chr2:234161200-234163200	Enhancers	Spleen	Spleen
6	chr2:234161400-234162200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:234161400-234162200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:234161400-234162200	Weak transcription	Pancreas	Pancrea
9	chr2:234161400-234162400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:234161400-234162400	Enhancers	Primary B cells from peripheral blood	blood
11	chr2:234161400-234162400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:234161400-234162600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr2:234161400-234162800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:234161400-234163000	Enhancers	Gastric	stomach
15	chr2:234161400-234164400	Weak transcription	Placenta	Placenta
16	chr2:234161400-234165200	Weak transcription	Ovary	ovary
17	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
18	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr2:234161600-234162200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:234161600-234162200	Weak transcription	Right Atrium	heart
23	chr2:234161600-234162400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr2:234161600-234162400	Enhancers	Brain Hippocampus Middle	brain
25	chr2:234161600-234162600	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
26	chr2:234161600-234162600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:234161600-234162600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:234161600-234162600	Enhancers	Adipose Nuclei	Adipose
29	chr2:234161600-234162600	Weak transcription	Aorta	Aorta
30	chr2:234161600-234162800	Enhancers	Rectal Smooth Muscle	rectum
31	chr2:234161600-234162800	Enhancers	Right Ventricle	heart
32	chr2:234161600-234163000	Enhancers	Brain Substantia Nigra	brain
33	chr2:234161600-234163200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr2:234161600-234163200	Transcr. at gene 5' and 3'	Dnd41	blood
35	chr2:234161600-234163400	Transcr. at gene 5' and 3'	A549	lung
36	chr2:234161600-234165000	Enhancers	Colon Smooth Muscle	Colon
37	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
38	chr2:234161800-234162200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr2:234161800-234162200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:234161800-234162200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr2:234161800-234162200	Weak transcription	Fetal Stomach	stomach
42	chr2:234161800-234162200	Weak transcription	Fetal Thymus	thymus
43	chr2:234161800-234162400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr2:234161800-234162400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr2:234161800-234162400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr2:234161800-234162400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:234161800-234162400	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr2:234161800-234162400	Weak transcription	Fetal Intestine Large	intestine
49	chr2:234161800-234162400	Enhancers	Stomach Smooth Muscle	stomach
50	chr2:234161800-234162400	Enhancers	HSMMtube	muscle

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