The 2.0 version of rSNPBase

Variant report

Variant rs56227616
Chromosome Location chr2:234157741-234157742
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:234151200-234159800 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr2:234152800-234159600 Weak transcription Spleen Spleen
3 chr2:234155200-234158400 Enhancers Primary T helper 17 cells PMA-I stimulated --
4 chr2:234155200-234158800 Enhancers Primary T cells fromperipheralblood blood
5 chr2:234155200-234159600 Enhancers Primary T helper cells PMA-I stimulated --
6 chr2:234155200-234159800 Enhancers Primary T helper naive cells fromperipheralblood blood
7 chr2:234155600-234158200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
8 chr2:234155600-234159800 Enhancers Primary T helper cells fromperipheralblood blood
9 chr2:234155800-234158000 Enhancers Primary T killer naive cells fromperipheralblood blood
10 chr2:234155800-234158600 Enhancers Primary Natural Killer cells fromperipheralblood blood
11 chr2:234155800-234159200 Enhancers Primary T killer memory cells from peripheral blood blood
12 chr2:234155800-234159600 Enhancers Primary T helper naive cells from peripheral blood blood
13 chr2:234155800-234159800 Enhancers Primary monocytes fromperipheralblood blood
14 chr2:234155800-234159800 Enhancers Primary T cells from cord blood blood
15 chr2:234156000-234158600 Enhancers Primary mononuclear cells fromperipheralblood Blood
16 chr2:234156200-234159400 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr2:234156200-234159800 Weak transcription Brain Anterior Caudate brain
18 chr2:234156200-234160200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr2:234156400-234159000 Weak transcription K562 blood
20 chr2:234156400-234159800 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr2:234156600-234159800 Weak transcription Duodenum Mucosa Duodenum
22 chr2:234156800-234159600 Weak transcription HUVEC blood vessel
23 chr2:234156800-234159800 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr2:234157000-234159600 Weak transcription HepG2 liver
25 chr2:234157000-234159800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr2:234157000-234159800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr2:234157000-234159800 Weak transcription A549 lung
28 chr2:234157000-234159800 Weak transcription Hela-S3 cervix
29 chr2:234157000-234160200 Weak transcription Placenta Amnion Placenta Amnion
30 chr2:234157200-234158400 Enhancers Primary T regulatory cells fromperipheralblood blood
31 chr2:234157200-234159600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr2:234157200-234159800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr2:234157200-234159800 Weak transcription HMEC breast
34 chr2:234157400-234157800 Enhancers Primary hematopoietic stem cells short term culture blood
35 chr2:234157400-234159200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr2:234157400-234160000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr2:234157600-234157800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
38 chr2:234157600-234158000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
39 chr2:234157600-234158000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr2:234157600-234158600 Enhancers Primary B cells from cord blood blood
41 chr2:234157600-234158600 Enhancers Thymus Thymus
42 chr2:234157600-234159800 Enhancers Primary neutrophils fromperipheralblood blood
43 chr2:234157600-234159800 Enhancers Primary hematopoietic stem cells blood
44 chr2:234157600-234159800 Enhancers Fetal Thymus thymus
45 chr2:234157600-234159800 Weak transcription NHEK skin

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Last update: Aug 31, 2015