Variant report

Variant	rs34701569
Chromosome Location	chr2:234143048-234143049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10164737	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10165561	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10167613	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10178603	0.89[ASN][1000 genomes]
rs10186850	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10187752	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10187822	0.89[ASN][1000 genomes]
rs10192579	0.84[ASN][1000 genomes]
rs10192702	0.90[ASN][1000 genomes]
rs10195395	0.89[ASN][1000 genomes]
rs10196794	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10199278	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10203952	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10206299	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10210302	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1045100	0.89[ASN][1000 genomes]
rs10929322	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10929325	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10929326	0.87[EUR][1000 genomes]
rs11679791	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11680089	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11680130	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11687982	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11688431	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11690131	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11694081	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12162308	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12692250	0.84[ASN][1000 genomes]
rs12692254	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12994971	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12994997	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13003866	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13009506	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13391356	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13411660	0.90[ASN][1000 genomes]
rs13412102	0.84[ASN][1000 genomes]
rs13418066	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1596017	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2119505	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2241878	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241879	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2241880	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289472	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289474	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28454240	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2880080	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34123137	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35300242	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36001488	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792108	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792109	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792111	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792112	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3816234	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3828309	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55835501	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56049444	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56227616	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6431654	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6431660	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6431661	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6705964	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6708373	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6738490	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6745825	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6752107	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7559194	0.90[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234138000-234151200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr2:234138400-234151200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr2:234140000-234148400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:234141200-234144800	Weak transcription	K562	blood
5	chr2:234141800-234143400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:234142000-234144200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:234142200-234143200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:234142200-234143400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:234142200-234143800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:234142200-234143800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr2:234142200-234144000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr2:234142400-234143200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr2:234142400-234143200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr2:234142400-234143400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:234142400-234143600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr2:234142400-234143800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:234142600-234143400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr2:234142600-234143800	Enhancers	GM12878-XiMat	blood
19	chr2:234142800-234143600	Weak transcription	Fetal Thymus	thymus
20	chr2:234143000-234143600	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links