Variant report

Variant	rs11032916
Chromosome Location	chr11:34911420-34911421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 179 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs1011518	0.86[ASN][1000 genomes]
rs1011519	0.86[ASN][1000 genomes]
rs10742331	0.82[ASN][1000 genomes]
rs10742332	0.86[ASN][1000 genomes]
rs10768103	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10768106	0.83[ASN][1000 genomes]
rs10768108	0.86[ASN][1000 genomes]
rs10768110	0.86[ASN][1000 genomes]
rs10836322	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836324	0.84[ASN][1000 genomes]
rs10836326	0.86[ASN][1000 genomes]
rs1117446	0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1326940	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1326941	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1326942	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1326943	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1326948	0.84[ASN][1000 genomes]
rs1430855	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1430856	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1544079	0.85[ASN][1000 genomes]
rs1571133	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1571134	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1571135	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1748073	0.86[ASN][1000 genomes]
rs1977420	0.95[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1977421	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1998602	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1998603	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1998604	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1998912	0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2016821	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025776	0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2025777	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2025778	0.84[ASN][1000 genomes]
rs2025779	0.86[ASN][1000 genomes]
rs2025780	0.86[ASN][1000 genomes]
rs2031687	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217478	0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2243929	0.86[ASN][1000 genomes]
rs2243948	0.86[ASN][1000 genomes]
rs2253128	0.86[ASN][1000 genomes]
rs2288667	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2288668	0.92[ASN][1000 genomes]
rs2303957	0.92[ASN][1000 genomes]
rs2303958	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2303959	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732531	0.84[ASN][1000 genomes]
rs2732532	0.84[ASN][1000 genomes]
rs2732551	0.86[ASN][1000 genomes]
rs2732555	0.86[ASN][1000 genomes]
rs2732559	0.86[ASN][1000 genomes]
rs2732560	0.82[ASN][1000 genomes]
rs2732562	0.86[ASN][1000 genomes]
rs2732563	0.86[ASN][1000 genomes]
rs2732564	0.86[ASN][1000 genomes]
rs2732565	0.86[ASN][1000 genomes]
rs2761820	0.86[ASN][1000 genomes]
rs2762951	0.85[ASN][1000 genomes]
rs2762953	0.86[ASN][1000 genomes]
rs2762954	0.86[ASN][1000 genomes]
rs2762956	0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs2762957	0.86[ASN][1000 genomes]
rs2762959	0.86[ASN][1000 genomes]
rs2762963	0.86[ASN][1000 genomes]
rs2762968	0.85[ASN][1000 genomes]
rs2762969	0.85[ASN][1000 genomes]
rs2767033	0.85[ASN][1000 genomes]
rs2767034	0.86[ASN][1000 genomes]
rs2767036	0.86[ASN][1000 genomes]
rs2767038	0.86[ASN][1000 genomes]
rs2767039	0.86[ASN][1000 genomes]
rs2767040	0.86[ASN][1000 genomes]
rs2767042	0.86[ASN][1000 genomes]
rs2767043	0.86[ASN][1000 genomes]
rs2767044	0.86[ASN][1000 genomes]
rs2767046	0.86[ASN][1000 genomes]
rs2767047	0.86[ASN][1000 genomes]
rs2915183	0.86[ASN][1000 genomes]
rs2915190	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2915193	1.00[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2915200	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2915204	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915205	1.00[CEU][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2915206	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2915211	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2915212	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2915215	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915216	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915219	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2915220	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2915221	0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2915222	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2915223	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2915224	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2915234	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2941040	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2941047	1.00[ASN][1000 genomes]
rs2941048	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2941049	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2941054	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2956078	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2956081	0.93[ASN][1000 genomes]
rs2956082	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956083	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956087	1.00[CEU][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2956088	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2956089	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956090	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2956091	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2956092	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2956093	0.99[ASN][1000 genomes]
rs2956094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2956096	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2956099	0.86[ASN][1000 genomes]
rs2956105	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2956106	0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2956107	1.00[CEU][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2956108	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2956110	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2956111	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2956113	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2956114	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2956115	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2956117	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2956121	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2956123	0.93[ASN][1000 genomes]
rs2985149	0.86[ASN][1000 genomes]
rs2985151	0.86[ASN][1000 genomes]
rs2985381	0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2985383	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2985384	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2985386	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985387	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2985388	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985389	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985390	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985391	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985392	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985393	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985394	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985395	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985396	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985397	1.00[ASN][1000 genomes]
rs2985398	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985399	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2985400	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985403	0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs2985404	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2985405	1.00[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2986404	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2986409	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2986410	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2986414	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2986416	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2986418	0.95[ASN][1000 genomes]
rs2986419	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2986420	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2986422	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2986423	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2986424	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2986425	1.00[CEU][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2986426	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2986427	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2986428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2986429	0.92[ASN][1000 genomes]
rs3932539	0.84[ASN][1000 genomes]
rs497109	0.84[ASN][1000 genomes]
rs497582	0.86[ASN][1000 genomes]
rs504034	0.90[YRI][hapmap];0.86[ASN][1000 genomes]
rs523472	0.84[ASN][1000 genomes]
rs891546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9326	0.86[ASN][1000 genomes]
rs952489	0.84[ASN][1000 genomes]
rs967505	0.93[ASN][1000 genomes]
rs967506	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs997664	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11032916	PDHX	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34882000-34919800	Weak transcription	Left Ventricle	heart
2	chr11:34891200-34919200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:34892600-34913000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:34893000-34921400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:34895000-34912000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:34895000-34921200	Weak transcription	Right Ventricle	heart
7	chr11:34895400-34912000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:34896000-34912200	Weak transcription	K562	blood
9	chr11:34896600-34911600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:34897000-34913000	Weak transcription	Lung	lung
11	chr11:34897000-34919200	Weak transcription	Fetal Stomach	stomach
12	chr11:34897600-34919200	Weak transcription	Fetal Heart	heart
13	chr11:34898200-34926800	Weak transcription	HSMMtube	muscle
14	chr11:34898400-34912800	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:34899000-34917400	Weak transcription	HSMM	muscle
16	chr11:34900000-34911600	Weak transcription	A549	lung
17	chr11:34900000-34918200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:34900200-34917200	Weak transcription	HUVEC	blood vessel
19	chr11:34900200-34921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:34901400-34917400	Weak transcription	Fetal Kidney	kidney
21	chr11:34901400-34920800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:34901600-34918200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:34901800-34916800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:34901800-34917000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:34902000-34912000	Weak transcription	NHLF	lung
26	chr11:34902000-34921600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:34902200-34912000	Weak transcription	NH-A	brain
28	chr11:34902200-34915600	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:34902400-34912800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:34902800-34911800	Weak transcription	Fetal Intestine Small	intestine
31	chr11:34903600-34919200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:34903800-34912000	Weak transcription	Hela-S3	cervix
33	chr11:34903800-34914200	Weak transcription	Fetal Brain Male	brain
34	chr11:34904000-34918600	Weak transcription	NHDF-Ad	bronchial
35	chr11:34904800-34915600	Weak transcription	GM12878-XiMat	blood
36	chr11:34905000-34912800	Weak transcription	Primary B cells from cord blood	blood
37	chr11:34905000-34917800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr11:34905200-34912600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:34905200-34912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:34905200-34915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:34905200-34915400	Weak transcription	Fetal Brain Female	brain
42	chr11:34905200-34917800	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:34906200-34916200	Weak transcription	Primary T cells from cord blood	blood
44	chr11:34906800-34911800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:34907200-34918200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:34907400-34912000	Weak transcription	Brain Substantia Nigra	brain
47	chr11:34907400-34917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:34907600-34912200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:34907800-34911800	Weak transcription	Esophagus	oesophagus
50	chr11:34907800-34918000	Weak transcription	Fetal Intestine Large	intestine

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