The 2.0 version of rSNPBase

Variant report

Variant rs1544079
Chromosome Location chr11:35027859-35027860
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:35000600-35035000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr11:35000800-35031000 Weak transcription Stomach Smooth Muscle stomach
3 chr11:35007000-35028000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr11:35007000-35029800 Weak transcription Esophagus oesophagus
5 chr11:35007200-35035200 Weak transcription Fetal Stomach stomach
6 chr11:35008600-35030800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr11:35009000-35028000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr11:35011400-35028200 Weak transcription HSMMtube muscle
9 chr11:35017200-35030800 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr11:35019800-35035400 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr11:35020000-35028000 Weak transcription Small Intestine intestine
12 chr11:35020000-35030400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr11:35020200-35028200 Weak transcription Fetal Lung lung
14 chr11:35020200-35028400 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr11:35020200-35029800 Weak transcription NHDF-Ad bronchial
16 chr11:35021400-35029400 Weak transcription Hela-S3 cervix
17 chr11:35022000-35028000 Weak transcription Gastric stomach
18 chr11:35025400-35029800 Weak transcription HMEC breast
19 chr11:35025400-35030800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr11:35025400-35035200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr11:35025600-35028000 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr11:35025600-35028200 Weak transcription Muscle Satellite Cultured Cells --
23 chr11:35025600-35028200 Weak transcription HSMM muscle
24 chr11:35025600-35028200 Weak transcription NH-A brain
25 chr11:35025600-35030600 Weak transcription Osteobl bone
26 chr11:35025600-35030800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr11:35025600-35030800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr11:35025800-35028000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr11:35025800-35028200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr11:35025800-35030400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
31 chr11:35026600-35028600 Enhancers NHEK skin
32 chr11:35026600-35032000 Enhancers Stomach Mucosa stomach
33 chr11:35026800-35028400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr11:35026800-35029200 Enhancers Primary T regulatory cells fromperipheralblood blood
35 chr11:35026800-35030200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr11:35027000-35028000 Weak transcription Fetal Intestine Small intestine
37 chr11:35027000-35028000 Weak transcription Left Ventricle heart
38 chr11:35027000-35028000 Weak transcription Pancreas Pancrea
39 chr11:35027000-35028000 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr11:35027000-35028200 Weak transcription Fetal Muscle Leg muscle
41 chr11:35027000-35029200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr11:35027000-35029600 Enhancers Primary T helper 17 cells PMA-I stimulated --
43 chr11:35027000-35029600 Weak transcription Colonic Mucosa Colon
44 chr11:35027000-35029800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr11:35027000-35029800 Weak transcription Psoas Muscle Psoas
46 chr11:35027000-35029800 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr11:35027000-35030800 Weak transcription Fetal Intestine Large intestine
48 chr11:35027000-35032200 Enhancers Duodenum Mucosa Duodenum
49 chr11:35027200-35028000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr11:35027200-35030800 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015