Variant report

Variant	rs11252210
Chromosome Location	chr10:3999334-3999335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3998272..4000817-chr10:4003234..4005418,4	MCF-7	breast:
2	chr10:3998313..4000642-chr10:4003967..4005833,2	K562	blood:
3	chr10:3990406..3992455-chr10:3997904..3999477,2	K562	blood:
4	chr10:3823745..3825918-chr10:3998602..4000476,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252216	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252233	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252234	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252246	1.00[EUR][1000 genomes]
rs11252247	1.00[EUR][1000 genomes]
rs11252248	1.00[EUR][1000 genomes]
rs11252251	1.00[EUR][1000 genomes]
rs11252254	1.00[EUR][1000 genomes]
rs11252255	1.00[EUR][1000 genomes]
rs11252256	1.00[EUR][1000 genomes]
rs11252261	1.00[EUR][1000 genomes]
rs11252262	1.00[EUR][1000 genomes]
rs11252263	1.00[EUR][1000 genomes]
rs11252266	1.00[EUR][1000 genomes]
rs11252269	1.00[EUR][1000 genomes]
rs11252272	1.00[EUR][1000 genomes]
rs11252276	1.00[EUR][1000 genomes]
rs11252278	1.00[EUR][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12218553	1.00[EUR][1000 genomes]
rs12219136	1.00[EUR][1000 genomes]
rs12219589	1.00[EUR][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs2025680	0.94[ASN][1000 genomes]
rs7068909	1.00[EUR][1000 genomes]
rs8181281	1.00[EUR][1000 genomes]
rs9888070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:3993800-4001800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:3997800-4001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:3998000-4002800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:3998600-3999800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:3998600-3999800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:3998600-4000000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:3998600-4001400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:3998600-4001600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:3998600-4001600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:3998600-4001600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr10:3998600-4001800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:3998600-4001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:3998600-4002000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:3998600-4002000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:3998600-4002000	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:3998800-4001600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:3998800-4001800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:3998800-4001800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:3998800-4002000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:3998800-4003400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:3999000-4002000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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