Variant report

Variant	rs11252278
Chromosome Location	chr10:4065762-4065763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4034845..4036569-chr10:4064234..4066048,2	MCF-7	breast:
2	chr10:4063549..4065847-chr10:4069623..4072057,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252210	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes]
rs11252216	1.00[EUR][1000 genomes]
rs11252233	1.00[EUR][1000 genomes]
rs11252234	1.00[EUR][1000 genomes]
rs11252246	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252247	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252248	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252251	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252253	0.93[ASN][1000 genomes]
rs11252254	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252255	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252256	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252261	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252262	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252263	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252266	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252267	0.86[ASN][1000 genomes]
rs11252269	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252272	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252276	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12218553	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12219136	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12219589	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs7068909	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8181281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888070	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4056200-4066800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:4056600-4068800	Weak transcription	NHDF-Ad	bronchial
3	chr10:4064200-4067000	Weak transcription	Right Ventricle	heart
4	chr10:4065000-4068200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:4065400-4065800	Enhancers	Dnd41	blood
6	chr10:4065600-4066400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:4065600-4067400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:4065600-4067600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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