Variant report

Variant	rs11252246
Chromosome Location	chr10:4032434-4032435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4027807..4029524-chr10:4032130..4034992,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252210	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes]
rs11252216	1.00[EUR][1000 genomes]
rs11252233	1.00[EUR][1000 genomes]
rs11252234	1.00[EUR][1000 genomes]
rs11252247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252251	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252253	1.00[ASN][1000 genomes]
rs11252254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252261	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252267	0.93[ASN][1000 genomes]
rs11252269	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252276	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12218553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes]
rs12774242	1.00[YRI][hapmap]
rs17131994	1.00[EUR][1000 genomes]
rs7068909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918147	1.00[YRI][hapmap]
rs8181281	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9888070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4022200-4036400	Weak transcription	Right Atrium	heart
3	chr10:4028200-4033800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4029600-4034000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:4030200-4037600	Weak transcription	HUVEC	blood vessel
6	chr10:4030600-4036200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:4030600-4037400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:4031200-4037000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:4032200-4037600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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