Variant report

Variant	rs11252216
Chromosome Location	chr10:4011133-4011134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes]
rs11252210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252233	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252234	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252246	1.00[EUR][1000 genomes]
rs11252247	1.00[EUR][1000 genomes]
rs11252248	1.00[EUR][1000 genomes]
rs11252251	1.00[EUR][1000 genomes]
rs11252254	1.00[EUR][1000 genomes]
rs11252255	1.00[EUR][1000 genomes]
rs11252256	1.00[EUR][1000 genomes]
rs11252261	1.00[EUR][1000 genomes]
rs11252262	1.00[EUR][1000 genomes]
rs11252263	1.00[EUR][1000 genomes]
rs11252266	1.00[EUR][1000 genomes]
rs11252269	1.00[EUR][1000 genomes]
rs11252272	1.00[EUR][1000 genomes]
rs11252276	1.00[EUR][1000 genomes]
rs11252278	1.00[EUR][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12218553	1.00[EUR][1000 genomes]
rs12219136	1.00[EUR][1000 genomes]
rs12219589	1.00[EUR][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs2025680	0.94[ASN][1000 genomes]
rs7068909	1.00[EUR][1000 genomes]
rs8181281	1.00[EUR][1000 genomes]
rs9888070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4002200-4022000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:4005600-4011600	Weak transcription	Small Intestine	intestine
3	chr10:4005600-4012400	Weak transcription	Esophagus	oesophagus
4	chr10:4006200-4011600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:4006400-4011200	Weak transcription	Dnd41	blood
6	chr10:4007400-4011600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:4007400-4011800	Weak transcription	Stomach Mucosa	stomach
8	chr10:4007800-4011600	Weak transcription	Fetal Intestine Small	intestine
9	chr10:4009800-4012000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr10:4010200-4011400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:4010400-4011200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr10:4010600-4011600	Enhancers	HUVEC	blood vessel
13	chr10:4010600-4011800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:4010800-4013200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:4010800-4015000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:4011000-4011800	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:4011000-4011800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:4011000-4012000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:4011000-4012000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:4011000-4012000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:4011000-4012000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:4011000-4012000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr10:4011000-4012200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr10:4011000-4012200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:4011000-4014200	Enhancers	Primary T cells from cord blood	blood
26	chr10:4011000-4014600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:4011000-4014800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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