Variant report

Variant	rs12218553
Chromosome Location	chr10:4040410-4040411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4033984..4038584-chr10:4038783..4042645,4	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252210	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes]
rs11252216	1.00[EUR][1000 genomes]
rs11252233	1.00[EUR][1000 genomes]
rs11252234	1.00[EUR][1000 genomes]
rs11252246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252253	1.00[ASN][1000 genomes]
rs11252254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252267	0.93[ASN][1000 genomes]
rs11252269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252276	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252278	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12219136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs7068909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181281	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9888070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4036800-4043200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4038600-4042000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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