Variant report

Variant	rs11252310
Chromosome Location	chr10:4104856-4104857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4100357..4102296-chr10:4102463..4105433,2	K562	blood:
2	chr10:3827665..3830357-chr10:4102508..4105467,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes]
rs11252210	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes]
rs11252216	1.00[EUR][1000 genomes]
rs11252233	1.00[EUR][1000 genomes]
rs11252234	1.00[EUR][1000 genomes]
rs11252246	1.00[EUR][1000 genomes]
rs11252247	1.00[EUR][1000 genomes]
rs11252248	1.00[EUR][1000 genomes]
rs11252251	1.00[EUR][1000 genomes]
rs11252254	1.00[EUR][1000 genomes]
rs11252255	1.00[EUR][1000 genomes]
rs11252256	1.00[EUR][1000 genomes]
rs11252261	1.00[EUR][1000 genomes]
rs11252262	1.00[EUR][1000 genomes]
rs11252263	1.00[EUR][1000 genomes]
rs11252266	1.00[EUR][1000 genomes]
rs11252269	1.00[EUR][1000 genomes]
rs11252272	1.00[EUR][1000 genomes]
rs11252276	1.00[EUR][1000 genomes]
rs11252278	1.00[EUR][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[EUR][1000 genomes]
rs11252298	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11252299	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11252304	1.00[CHB][hapmap]
rs11252311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs11252347	1.00[JPT][hapmap]
rs12218553	1.00[EUR][1000 genomes]
rs12219136	1.00[EUR][1000 genomes]
rs12219589	1.00[EUR][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs7068909	1.00[EUR][1000 genomes]
rs8181281	1.00[EUR][1000 genomes]
rs9888070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart
2	chr10:4099600-4105400	Weak transcription	Pancreas	Pancrea
3	chr10:4101000-4110000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:4102400-4109200	Weak transcription	Spleen	Spleen
5	chr10:4102600-4109400	Weak transcription	Thymus	Thymus
6	chr10:4103200-4105000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:4103400-4105000	Enhancers	Adipose Nuclei	Adipose
8	chr10:4103400-4105000	Enhancers	Ovary	ovary
9	chr10:4103400-4105000	Enhancers	Stomach Mucosa	stomach
10	chr10:4103400-4106200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:4103600-4105000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:4103600-4105000	Enhancers	Colonic Mucosa	Colon
13	chr10:4103600-4105000	Enhancers	Psoas Muscle	Psoas
14	chr10:4103600-4105000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr10:4103600-4105000	Enhancers	NHLF	lung
16	chr10:4103600-4105600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:4103600-4105600	Enhancers	Lung	lung
18	chr10:4103800-4105200	Enhancers	Hela-S3	cervix
19	chr10:4104000-4105000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:4104000-4105400	Weak transcription	Esophagus	oesophagus
21	chr10:4104000-4109200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:4104000-4109200	Weak transcription	Fetal Muscle Leg	muscle
23	chr10:4104200-4105000	Enhancers	Duodenum Mucosa	Duodenum
24	chr10:4104200-4105000	Enhancers	Osteobl	bone
25	chr10:4104200-4106000	Weak transcription	Fetal Intestine Large	intestine
26	chr10:4104200-4106400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr10:4104200-4108600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:4104200-4108600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr10:4104200-4108800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:4104200-4109000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:4104200-4109000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:4104200-4109000	Weak transcription	Fetal Thymus	thymus
33	chr10:4104200-4109200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:4104200-4109200	Weak transcription	Placenta	Placenta
35	chr10:4104200-4109400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr10:4104200-4109400	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:4104200-4109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:4104200-4111800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:4104400-4109200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr10:4104400-4109200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:4104400-4109400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:4104400-4117200	Weak transcription	Small Intestine	intestine
43	chr10:4104600-4105000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:4104600-4105000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr10:4104600-4108600	Weak transcription	Fetal Intestine Small	intestine
46	chr10:4104600-4109200	Weak transcription	NHDF-Ad	bronchial
47	chr10:4104600-4109400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:4104600-4109800	Weak transcription	Fetal Lung	lung
49	chr10:4104600-4111600	Weak transcription	Primary T cells from cord blood	blood
50	chr10:4104800-4105400	Enhancers	Fetal Muscle Trunk	muscle

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