Variant report

Variant	rs11252234
Chromosome Location	chr10:4022085-4022086
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes]
rs11252210	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252215	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252216	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11252233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252246	1.00[EUR][1000 genomes]
rs11252247	1.00[EUR][1000 genomes]
rs11252248	1.00[EUR][1000 genomes]
rs11252251	1.00[EUR][1000 genomes]
rs11252254	1.00[EUR][1000 genomes]
rs11252255	1.00[EUR][1000 genomes]
rs11252256	1.00[EUR][1000 genomes]
rs11252261	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11252262	1.00[EUR][1000 genomes]
rs11252263	1.00[EUR][1000 genomes]
rs11252266	1.00[EUR][1000 genomes]
rs11252269	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11252272	1.00[EUR][1000 genomes]
rs11252276	1.00[EUR][1000 genomes]
rs11252278	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12218553	1.00[EUR][1000 genomes]
rs12219136	1.00[EUR][1000 genomes]
rs12219589	1.00[EUR][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs7068909	1.00[EUR][1000 genomes]
rs8181281	1.00[EUR][1000 genomes]
rs9888070	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4015400-4022200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:4017400-4025200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:4017400-4025400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:4017800-4025200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr10:4018000-4024400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr10:4018200-4022800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:4018200-4024400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:4018200-4025200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:4020200-4025200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr10:4020200-4032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:4020400-4022800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:4020600-4023600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:4020800-4022800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr10:4020800-4024200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:4020800-4024400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr10:4021000-4022800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:4021000-4023600	Enhancers	Dnd41	blood
18	chr10:4021200-4023600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:4021200-4024400	Enhancers	Primary T cells from cord blood	blood
20	chr10:4021200-4027200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:4021400-4022600	Enhancers	Colonic Mucosa	Colon
22	chr10:4021400-4022800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr10:4021800-4022400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:4021800-4023000	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr10:4021800-4024200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr10:4022000-4022200	Enhancers	Right Atrium	heart
27	chr10:4022000-4022400	Enhancers	Lung	lung
28	chr10:4022000-4022400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr10:4022000-4022600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:4022000-4022600	Enhancers	Fetal Thymus	thymus
31	chr10:4022000-4022600	Enhancers	Spleen	Spleen
32	chr10:4022000-4023800	Enhancers	Primary hematopoietic stem cells	blood
33	chr10:4022000-4023800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:4022000-4024600	Enhancers	Primary monocytes fromperipheralblood	blood

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