Variant report

Variant	rs11252262
Chromosome Location	chr10:4051440-4051441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4033038..4035394-chr10:4049800..4051958,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10430774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252210	1.00[EUR][1000 genomes]
rs11252215	1.00[EUR][1000 genomes]
rs11252216	1.00[EUR][1000 genomes]
rs11252233	1.00[EUR][1000 genomes]
rs11252234	1.00[EUR][1000 genomes]
rs11252246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252251	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252253	1.00[ASN][1000 genomes]
rs11252254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252267	0.93[ASN][1000 genomes]
rs11252269	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252276	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252282	1.00[EUR][1000 genomes]
rs11252289	1.00[EUR][1000 genomes]
rs11252296	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11252298	1.00[EUR][1000 genomes]
rs11252299	1.00[EUR][1000 genomes]
rs11252310	1.00[EUR][1000 genomes]
rs11252311	1.00[EUR][1000 genomes]
rs11252314	1.00[EUR][1000 genomes]
rs11252325	1.00[EUR][1000 genomes]
rs11252328	1.00[EUR][1000 genomes]
rs11252330	1.00[EUR][1000 genomes]
rs12218553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12219589	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220113	1.00[EUR][1000 genomes]
rs12221033	1.00[EUR][1000 genomes]
rs17131994	1.00[EUR][1000 genomes]
rs7068909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181281	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9888070	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2762838	chr10:4048172-4054844	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4043400-4055800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4047400-4051800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:4047400-4055800	Weak transcription	Psoas Muscle	Psoas
4	chr10:4047400-4058400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:4049400-4051600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:4050800-4053200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:4051000-4052200	Enhancers	Fetal Heart	heart
8	chr10:4051400-4052600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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