Variant report

Variant	rs1125502
Chromosome Location	chr8:91674716-91674717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:31426550..31428867-chr8:91672656..91674769,2	MCF-7	breast:
2	chr8:91669462..91675137-chr8:91678478..91682798,5	MCF-7	breast:
3	chr12:63429516..63431734-chr8:91673428..91674948,2	MCF-7	breast:
4	chr8:91656207..91664773-chr8:91669059..91678442,20	MCF-7	breast:
5	chr8:91673440..91674997-chr8:91677794..91679536,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10086155	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs10090406	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10091274	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808624	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808625	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10808626	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956763	0.83[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10956764	0.83[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes]
rs11777332	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16905145	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2339228	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs2339229	0.80[AMR][1000 genomes]
rs2339230	0.82[JPT][hapmap]
rs34753356	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35547810	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4236824	0.93[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4236825	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4236826	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4236827	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs4236828	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4301409	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4323436	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4330649	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4330650	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4332092	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4335090	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4335091	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4338064	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4376466	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4377923	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4377924	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442097	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4520126	0.83[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes]
rs4538831	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4606020	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4637779	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4642598	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734296	0.84[JPT][hapmap];0.80[AMR][1000 genomes]
rs4735295	0.89[JPT][hapmap]
rs4735306	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4735308	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4735309	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4735341	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs6471243	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs6471245	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6471248	0.83[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6471249	0.83[CEU][hapmap];0.80[CHB][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs6985723	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6993648	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6994433	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6997009	0.82[CEU][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes]
rs6998736	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7003026	0.83[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7009348	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7017260	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7818125	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7822742	0.83[CEU][hapmap];0.86[AMR][1000 genomes]
rs7832679	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7835610	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs7839617	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7840113	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885497	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91666800-91677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:91672400-91675000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:91674200-91675800	Enhancers	GM12878-XiMat	blood
4	chr8:91674200-91676000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:91674600-91675200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links