Variant report

Variant	rs4236827
Chromosome Location	chr8:91688943-91688944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91687150..91691411-chr8:91769036..91770944,3	MCF-7	breast:
2	chr8:91655789..91659978-chr8:91686080..91690997,6	K562	blood:
3	chr8:91688548..91689068-chr8:91960200..91960706,2	MCF-7	breast:
4	chr8:91653197..91659696-chr8:91680011..91690485,28	MCF-7	breast:
5	chr8:91687095..91689942-chr8:91927484..91931444,3	MCF-7	breast:
6	chr17:59489405..59489919-chr8:91688171..91689049,2	MCF-7	breast:
7	chr8:91681720..91683861-chr8:91687686..91689545,2	K562	blood:
8	chr8:91652941..91663346-chr8:91680436..91690653,24	MCF-7	breast:
9	chr8:91680534..91682266-chr8:91687162..91689397,2	MCF-7	breast:
10	chr8:91688559..91689204-chr8:91770279..91771007,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10086155	0.94[JPT][hapmap]
rs10090406	0.89[ASN][1000 genomes]
rs10091274	0.89[ASN][1000 genomes]
rs10504898	0.85[CEU][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs10808624	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10808625	0.82[CEU][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs10808626	0.89[ASN][1000 genomes]
rs10956763	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10956764	0.94[JPT][hapmap]
rs1125502	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11777332	0.88[ASN][1000 genomes]
rs12543806	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12548862	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12677100	0.85[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs12678287	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13259610	0.84[AMR][1000 genomes]
rs13266461	1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16905145	0.89[ASN][1000 genomes]
rs1827667	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2339228	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs2339230	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs28568272	0.87[ASN][1000 genomes]
rs35547810	0.87[ASN][1000 genomes]
rs4236824	0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.87[ASN][1000 genomes]
rs4236825	0.82[CEU][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[ASN][1000 genomes]
rs4236826	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4236828	0.89[ASN][1000 genomes]
rs4301409	0.88[ASN][1000 genomes]
rs4323436	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4330649	0.82[CEU][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4330650	0.82[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs4332092	0.88[ASN][1000 genomes]
rs4335090	0.89[ASN][1000 genomes]
rs4335091	0.82[CEU][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4376466	0.82[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs4377923	0.82[CEU][hapmap];0.88[ASN][1000 genomes]
rs4377924	0.81[CEU][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4442097	0.82[CEU][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs4520126	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4538831	0.82[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs4606020	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs4637779	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4642598	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4734296	1.00[JPT][hapmap]
rs4735295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4735306	0.89[ASN][1000 genomes]
rs4735308	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4735309	0.82[CEU][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs4735341	0.94[JPT][hapmap]
rs60187521	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6471243	0.87[CHD][hapmap];0.81[ASN][1000 genomes]
rs6471245	0.82[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs6471248	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6471249	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6985723	0.83[ASN][1000 genomes]
rs6993648	0.82[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs6994433	0.82[CEU][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs6997009	0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6998736	0.84[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7003026	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7008239	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7009348	0.83[ASN][1000 genomes]
rs7017260	0.89[ASN][1000 genomes]
rs7818125	0.82[CEU][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7821994	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7822742	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs7832679	0.82[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs7835610	0.87[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7839617	0.82[CEU][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.89[ASN][1000 genomes]
rs7840113	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7840203	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885497	0.82[CEU][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91680600-91689800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:91683800-91691000	Weak transcription	Placenta	Placenta
3	chr8:91683800-91691600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:91684200-91691800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:91685400-91689600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:91686400-91689800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:91686800-91689600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr8:91686800-91689800	Enhancers	Colon Smooth Muscle	Colon
9	chr8:91687200-91689000	Enhancers	Adipose Nuclei	Adipose
10	chr8:91687200-91689000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:91687400-91689200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:91687400-91689400	Enhancers	Rectal Smooth Muscle	rectum
13	chr8:91687600-91689800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:91687800-91689000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:91687800-91689600	Enhancers	NHDF-Ad	bronchial
16	chr8:91688000-91689000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr8:91688000-91689000	Enhancers	Brain Cingulate Gyrus	brain
18	chr8:91688000-91689000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr8:91688000-91689000	Enhancers	Brain Substantia Nigra	brain
20	chr8:91688000-91689000	Enhancers	Osteobl	bone
21	chr8:91688000-91689200	Enhancers	Brain Hippocampus Middle	brain
22	chr8:91688000-91689200	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr8:91688000-91689600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:91688000-91689600	Enhancers	Brain Germinal Matrix	brain
25	chr8:91688000-91689600	Enhancers	Fetal Muscle Leg	muscle
26	chr8:91688000-91690400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr8:91688200-91689000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:91688200-91689400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:91688200-91689800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:91688200-91690000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr8:91688200-91690000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr8:91688400-91689000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr8:91688400-91689000	Enhancers	HSMMtube	muscle
34	chr8:91688400-91689200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr8:91688400-91689400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr8:91688400-91689400	Enhancers	NHLF	lung
37	chr8:91688400-91689600	Enhancers	Placenta Amnion	Placenta Amnion
38	chr8:91688400-91689800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr8:91688400-91689800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr8:91688600-91689000	Enhancers	Fetal Kidney	kidney
41	chr8:91688600-91689000	Enhancers	Fetal Lung	lung
42	chr8:91688600-91689000	Enhancers	HSMM	muscle
43	chr8:91688600-91689400	Weak transcription	Right Atrium	heart
44	chr8:91688600-91689600	Enhancers	H9 Cell Line	embryonic stem cell
45	chr8:91688600-91690000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:91688800-91689000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:91688800-91690400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:91688800-91691800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr8:91688800-91693400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:91688800-91694000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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