Variant report

Variant	rs6994433
Chromosome Location	chr8:91678954-91678955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91673440..91674997-chr8:91677794..91679536,2	MCF-7	breast:
2	chr8:91665621..91667462-chr8:91678838..91681595,2	MCF-7	breast:
3	chr8:91648844..91651192-chr8:91678882..91680652,2	K562	blood:
4	chr8:91669462..91675137-chr8:91678478..91682798,5	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10086155	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs10090406	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10091274	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808625	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808626	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956763	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10956764	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10956765	0.81[CEU][hapmap];0.81[CHD][hapmap];0.95[MEX][hapmap]
rs10956770	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap]
rs10956776	0.81[CEU][hapmap];0.89[YRI][hapmap]
rs10956777	0.81[CEU][hapmap]
rs1125502	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11777332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542223	0.85[YRI][hapmap]
rs12550194	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap]
rs12677100	0.84[CHD][hapmap];0.83[JPT][hapmap]
rs13265863	0.81[ASW][hapmap];0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap]
rs1354516	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.90[MEX][hapmap]
rs1394503	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs1394505	0.81[CEU][hapmap];0.89[YRI][hapmap]
rs1394509	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap]
rs1463916	0.81[CEU][hapmap]
rs1463917	0.81[CEU][hapmap];0.88[GIH][hapmap];0.86[MEX][hapmap];0.89[YRI][hapmap]
rs1463918	0.81[ASW][hapmap];0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs1463919	0.81[ASW][hapmap];0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap]
rs1604915	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap]
rs16905145	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1827668	0.81[CEU][hapmap]
rs1976495	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap]
rs2339228	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.86[ASN][1000 genomes]
rs2339229	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2339230	0.81[CEU][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34753356	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35547810	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236824	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236827	0.82[CEU][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[ASN][1000 genomes]
rs4236828	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4301409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330649	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4330650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4332092	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4335090	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4338064	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4376466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4377923	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4520126	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4538831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4606020	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4637779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4642598	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734296	0.81[CEU][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4735295	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4735306	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735341	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4735363	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs4735368	0.81[ASW][hapmap];0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap]
rs6471243	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[ASN][1000 genomes]
rs6471245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471248	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6471249	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6471251	0.81[CEU][hapmap]
rs6471252	0.81[CEU][hapmap]
rs6983827	0.83[YRI][hapmap]
rs6985723	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6993648	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997009	0.85[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6998736	0.89[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7003026	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7008239	0.88[ASN][1000 genomes]
rs7009348	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017260	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814682	0.81[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap]
rs7816709	0.81[CEU][hapmap]
rs7817599	0.81[CEU][hapmap]
rs7818125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821994	0.82[ASN][1000 genomes]
rs7822742	0.85[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7832679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835610	0.85[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.88[ASN][1000 genomes]
rs7839617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840203	0.82[ASN][1000 genomes]
rs7845074	0.81[CEU][hapmap]
rs885497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6994433	RUNX1T1	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91677600-91679000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:91677800-91679000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:91678400-91679000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:91678400-91679000	ZNF genes & repeats	Aorta	Aorta
5	chr8:91678600-91679000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:91678600-91679000	Weak transcription	A549	lung
7	chr8:91678600-91680600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:91678800-91679000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr8:91678800-91679400	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:91678800-91679600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:91678800-91682600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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