Variant report

Variant	rs7003026
Chromosome Location	chr8:91704202-91704203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91655211..91656811-chr8:91701508..91704271,2	K562	blood:
2	chr8:91703619..91705136-chr8:91710451..91712123,2	MCF-7	breast:
3	chr8:91681513..91683796-chr8:91702436..91704437,2	MCF-7	breast:
4	chr8:91703739..91707372-chr8:91708045..91711511,5	K562	blood:
5	chr8:91703809..91704698-chr8:91766212..91767104,5	MCF-7	breast:
6	chr8:91703935..91704591-chr8:91899605..91900403,3	MCF-7	breast:
7	chr8:91653608..91662753-chr8:91702053..91707757,26	MCF-7	breast:
8	chr8:91682168..91683156-chr8:91704088..91704602,2	MCF-7	breast:
9	chr8:91699039..91701699-chr8:91701924..91705332,3	MCF-7	breast:
10	chr8:91656428..91660411-chr8:91700903..91705938,6	MCF-7	breast:
11	chr8:91655311..91659894-chr8:91701508..91706218,8	K562	blood:
12	chr8:91704062..91704591-chr8:91899605..91900389,2	MCF-7	breast:
13	chr8:91703653..91704652-chr8:91899599..91900269,2	MCF-7	breast:
14	chr8:91703063..91706391-chr8:91765504..91767653,3	MCF-7	breast:
15	chr8:91703897..91704427-chr8:91924931..91925718,2	MCF-7	breast:
16	chr8:91702608..91708143-chr8:91763380..91770972,10	MCF-7	breast:
17	chr8:91594033..91595914-chr8:91702199..91704842,2	MCF-7	breast:
18	chr8:91703840..91704698-chr8:91766212..91767104,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs10086155	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10090406	0.91[ASN][1000 genomes]
rs10091274	0.91[ASN][1000 genomes]
rs10808624	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10808625	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10808626	0.91[ASN][1000 genomes]
rs10808630	0.96[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10956763	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956764	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10956765	0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956766	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10956767	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10956768	0.87[EUR][1000 genomes]
rs10956769	0.87[EUR][1000 genomes]
rs10956770	0.96[CEU][hapmap];0.84[CHB][hapmap]
rs10956775	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10956776	0.96[CEU][hapmap];0.85[CHB][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10956777	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1125502	0.83[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11777332	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11990842	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12542205	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12542223	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12542788	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12544556	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12545337	0.93[EUR][1000 genomes]
rs12548491	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12548862	0.84[ASN][1000 genomes]
rs12550194	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12677100	0.82[CEU][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12678287	0.84[ASN][1000 genomes]
rs12680025	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13265863	0.96[CEU][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1354516	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1394503	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1394505	0.96[CEU][hapmap];0.85[CHB][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1394506	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1394507	0.93[EUR][1000 genomes]
rs1394509	0.96[CEU][hapmap];0.84[CHB][hapmap]
rs1463916	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1463917	0.96[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1463918	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1463919	0.96[CEU][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1604915	0.96[CEU][hapmap];0.84[CHB][hapmap]
rs16905145	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17645841	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1827667	0.84[ASN][1000 genomes]
rs1827668	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1965369	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1976495	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2339228	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2339229	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2339230	0.96[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34753356	0.81[ASN][1000 genomes]
rs34883198	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35547810	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3907704	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3913687	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4236824	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4236825	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4236826	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4236827	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4236828	0.91[ASN][1000 genomes]
rs4275197	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4301409	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4323436	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4330649	0.86[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4330650	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4332092	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4335090	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4335091	0.86[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4338064	0.82[ASN][1000 genomes]
rs4368938	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4376466	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4377923	0.86[CEU][hapmap];0.90[ASN][1000 genomes]
rs4377924	0.85[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4442097	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4520126	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4531006	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4538831	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs4606020	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4613959	0.92[EUR][1000 genomes]
rs4637779	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs4642598	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4734296	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4735295	0.94[JPT][hapmap]
rs4735306	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4735308	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4735309	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4735341	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4735363	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4735367	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4735368	0.96[CEU][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55796168	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60187521	0.84[ASN][1000 genomes]
rs61540332	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471243	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs6471245	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6471248	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471249	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471251	0.96[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471252	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6983827	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6985723	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6993648	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6994433	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6997009	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6998736	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7002784	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7009348	0.97[ASN][1000 genomes]
rs7017260	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7017405	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7814682	0.96[CEU][hapmap]
rs7816709	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs7817599	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs7818125	0.86[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7821994	0.86[ASN][1000 genomes]
rs7822742	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829728	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7832679	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7835610	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7839617	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7840113	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7840203	0.86[ASN][1000 genomes]
rs7843505	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7845074	0.96[CEU][hapmap];0.85[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs885497	0.86[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9643313	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3326233	chr8:91690825-91708859	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91692800-91706400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:91695000-91709600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:91697400-91704400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:91698800-91721200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:91699400-91704400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:91699600-91704600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:91700400-91704400	Weak transcription	NHDF-Ad	bronchial
8	chr8:91702600-91704600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:91702800-91705600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:91703000-91705200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:91703000-91705400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:91703000-91705600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:91703200-91705000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr8:91703200-91705200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:91703400-91705400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:91704200-91705800	Enhancers	NHLF	lung

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