Variant report

Variant	rs885497
Chromosome Location	chr8:91681557-91681558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91679586..91682338-chr8:91683375..91685862,2	MCF-7	breast:
2	chr8:91680534..91682266-chr8:91687162..91689397,2	MCF-7	breast:
3	chr8:91653197..91659696-chr8:91680011..91690485,28	MCF-7	breast:
4	chr8:91665621..91667462-chr8:91678838..91681595,2	MCF-7	breast:
5	chr8:91660322..91664310-chr8:91681072..91684621,6	MCF-7	breast:
6	chr8:91675067..91677256-chr8:91678996..91683424,4	K562	blood:
7	chr8:91681513..91683796-chr8:91702436..91704437,2	MCF-7	breast:
8	chr8:91656547..91658787-chr8:91681299..91684513,3	K562	blood:
9	chr8:91680263..91682720-chr8:91684453..91686696,2	K562	blood:
10	chr8:91652941..91663346-chr8:91680436..91690653,24	MCF-7	breast:
11	chr8:91675067..91677909-chr8:91679450..91681786,2	K562	blood:
12	chr8:91671956..91674475-chr8:91679710..91683408,3	K562	blood:
13	chr8:91669462..91675137-chr8:91678478..91682798,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10086155	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs10090406	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10091274	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808624	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10808626	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956763	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10956764	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10956765	0.81[CEU][hapmap]
rs10956770	0.81[CEU][hapmap]
rs10956776	0.82[CEU][hapmap]
rs10956777	0.82[CEU][hapmap]
rs1125502	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11777332	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550194	0.81[CEU][hapmap]
rs12677100	0.83[JPT][hapmap]
rs13265863	0.81[CEU][hapmap]
rs1354516	0.81[CEU][hapmap]
rs1394503	0.82[CEU][hapmap]
rs1394505	0.82[CEU][hapmap]
rs1394509	0.81[CEU][hapmap]
rs1463916	0.82[CEU][hapmap]
rs1463917	0.82[CEU][hapmap];0.82[YRI][hapmap]
rs1463918	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs1463919	0.81[CEU][hapmap]
rs1604915	0.81[CEU][hapmap]
rs16905145	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1827668	0.82[CEU][hapmap]
rs1976495	0.81[CEU][hapmap]
rs2339228	0.81[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2339229	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2339230	0.81[CEU][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs34753356	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35547810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236824	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4236827	0.82[CEU][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4236828	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4301409	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330649	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4330650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4332092	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4335090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4338064	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4376466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4377923	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442097	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4520126	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4538831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4606020	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4637779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4642598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734296	0.82[CEU][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4735295	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4735306	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4735341	0.82[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs4735363	0.82[CEU][hapmap]
rs4735368	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs6471243	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs6471245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471248	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6471249	0.86[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6471251	0.82[CEU][hapmap]
rs6471252	0.82[CEU][hapmap]
rs6983827	0.80[CEU][hapmap]
rs6985723	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6993648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997009	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6998736	0.89[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7003026	0.86[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7008239	0.88[ASN][1000 genomes]
rs7009348	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017260	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814682	0.81[CEU][hapmap]
rs7816709	0.82[CEU][hapmap]
rs7817599	0.82[CEU][hapmap]
rs7818125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821994	0.82[ASN][1000 genomes]
rs7822742	0.86[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7832679	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835610	0.85[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7839617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7840203	0.82[ASN][1000 genomes]
rs7845074	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91678800-91682600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:91679000-91682600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:91679000-91682600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:91679000-91682600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:91679000-91682600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:91679000-91683000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:91679000-91683400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:91679000-91688000	Weak transcription	Aorta	Aorta
9	chr8:91679200-91683000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:91679200-91683000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr8:91679600-91682600	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:91680400-91682600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr8:91680400-91683400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr8:91680600-91683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:91680600-91684400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:91680600-91689800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr8:91681000-91682600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:91681000-91684600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr8:91681200-91681800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr8:91681200-91682000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:91681400-91682400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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