Variant report

Variant	rs4735308
Chromosome Location	chr8:91688658-91688659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91687150..91691411-chr8:91769036..91770944,3	MCF-7	breast:
2	chr8:91655789..91659978-chr8:91686080..91690997,6	K562	blood:
3	chr8:91688548..91689068-chr8:91960200..91960706,2	MCF-7	breast:
4	chr8:91653197..91659696-chr8:91680011..91690485,28	MCF-7	breast:
5	chr8:91687095..91689942-chr8:91927484..91931444,3	MCF-7	breast:
6	chr8:91682030..91684734-chr8:91686454..91688857,3	MCF-7	breast:
7	chr17:59489405..59489919-chr8:91688171..91689049,2	MCF-7	breast:
8	chr8:91681720..91683861-chr8:91687686..91689545,2	K562	blood:
9	chr8:91652941..91663346-chr8:91680436..91690653,24	MCF-7	breast:
10	chr8:91680534..91682266-chr8:91687162..91689397,2	MCF-7	breast:
11	chr8:91688559..91689204-chr8:91770279..91771007,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10086155	0.82[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10090406	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10091274	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808626	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10956763	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10956764	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10956765	0.81[CEU][hapmap]
rs10956770	0.81[CEU][hapmap]
rs10956776	0.82[CEU][hapmap]
rs10956777	0.82[CEU][hapmap]
rs1125502	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11777332	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12543806	0.82[ASN][1000 genomes]
rs12550194	0.81[CEU][hapmap]
rs12677100	0.88[JPT][hapmap]
rs13265863	0.81[CEU][hapmap]
rs13266461	0.80[JPT][hapmap]
rs1354516	0.81[CEU][hapmap]
rs1394503	0.82[CEU][hapmap]
rs1394505	0.82[CEU][hapmap]
rs1394509	0.81[CEU][hapmap]
rs1463916	0.82[CEU][hapmap]
rs1463917	0.82[CEU][hapmap];0.82[YRI][hapmap]
rs1463918	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs1463919	0.81[CEU][hapmap]
rs1604915	0.81[CEU][hapmap]
rs16905145	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1827668	0.82[CEU][hapmap]
rs1976495	0.81[CEU][hapmap]
rs2339228	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2339229	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2339230	0.81[CEU][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs28568272	0.82[ASN][1000 genomes]
rs34753356	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35547810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236824	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4236825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236827	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4236828	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4301409	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4323436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4330649	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4330650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4332092	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4335090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4338064	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4376466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4377923	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4377924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4442097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4520126	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4538831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4606020	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4637779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4642598	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734296	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4735295	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4735306	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4735309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4735341	0.82[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs4735363	0.82[CEU][hapmap]
rs4735368	0.81[CEU][hapmap];0.82[YRI][hapmap]
rs6471243	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs6471245	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471248	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6471249	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6471251	0.82[CEU][hapmap]
rs6471252	0.82[CEU][hapmap]
rs6983827	0.80[CEU][hapmap]
rs6985723	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6993648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6994433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6997009	0.85[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6998736	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7003026	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7008239	0.88[ASN][1000 genomes]
rs7009348	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7017260	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7814682	0.81[CEU][hapmap]
rs7816709	0.82[CEU][hapmap]
rs7817599	0.82[CEU][hapmap]
rs7818125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7821994	0.85[ASN][1000 genomes]
rs7822742	0.86[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7832679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7835610	0.85[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7839617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7840113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7840203	0.85[ASN][1000 genomes]
rs7845074	0.82[CEU][hapmap]
rs885497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91680600-91689800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:91683800-91691000	Weak transcription	Placenta	Placenta
3	chr8:91683800-91691600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:91684200-91691800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:91685400-91689600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:91686400-91689800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:91686800-91689600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr8:91686800-91689800	Enhancers	Colon Smooth Muscle	Colon
9	chr8:91687200-91689000	Enhancers	Adipose Nuclei	Adipose
10	chr8:91687200-91689000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr8:91687400-91689200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:91687400-91689400	Enhancers	Rectal Smooth Muscle	rectum
13	chr8:91687600-91689800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:91687800-91688800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:91687800-91688800	Enhancers	Stomach Smooth Muscle	stomach
16	chr8:91687800-91689000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:91687800-91689600	Enhancers	NHDF-Ad	bronchial
18	chr8:91688000-91688800	Enhancers	Brain Angular Gyrus	brain
19	chr8:91688000-91689000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:91688000-91689000	Enhancers	Brain Cingulate Gyrus	brain
21	chr8:91688000-91689000	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr8:91688000-91689000	Enhancers	Brain Substantia Nigra	brain
23	chr8:91688000-91689000	Enhancers	Osteobl	bone
24	chr8:91688000-91689200	Enhancers	Brain Hippocampus Middle	brain
25	chr8:91688000-91689200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr8:91688000-91689600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:91688000-91689600	Enhancers	Brain Germinal Matrix	brain
28	chr8:91688000-91689600	Enhancers	Fetal Muscle Leg	muscle
29	chr8:91688000-91690400	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:91688200-91689000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:91688200-91689400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:91688200-91689800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr8:91688200-91690000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:91688200-91690000	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr8:91688400-91688800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:91688400-91688800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr8:91688400-91688800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr8:91688400-91688800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:91688400-91688800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr8:91688400-91688800	Enhancers	Fetal Heart	heart
41	chr8:91688400-91688800	Enhancers	Psoas Muscle	Psoas
42	chr8:91688400-91688800	Enhancers	NHEK	skin
43	chr8:91688400-91689000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr8:91688400-91689000	Enhancers	HSMMtube	muscle
45	chr8:91688400-91689200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr8:91688400-91689400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr8:91688400-91689400	Enhancers	NHLF	lung
48	chr8:91688400-91689600	Enhancers	Placenta Amnion	Placenta Amnion
49	chr8:91688400-91689800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr8:91688400-91689800	Enhancers	HUES6 Cell Line	embryonic stem cell

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