Variant report

Variant	rs4323436
Chromosome Location	chr8:91683028-91683029
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91653197..91659696-chr8:91680011..91690485,28	MCF-7	breast:
2	chr8:91660322..91664310-chr8:91681072..91684621,6	MCF-7	breast:
3	chr8:91675067..91677256-chr8:91678996..91683424,4	K562	blood:
4	chr8:91681720..91683861-chr8:91687686..91689545,2	K562	blood:
5	chr8:91669120..91671643-chr8:91681940..91683479,2	K562	blood:
6	chr8:91681513..91683796-chr8:91702436..91704437,2	MCF-7	breast:
7	chr8:91656547..91658787-chr8:91681299..91684513,3	K562	blood:
8	chr8:91652941..91663346-chr8:91680436..91690653,24	MCF-7	breast:
9	chr8:91650629..91653115-chr8:91682985..91684904,2	MCF-7	breast:
10	chr8:91682030..91684734-chr8:91686454..91688857,3	MCF-7	breast:
11	chr8:91681989..91684010-chr8:91924151..91925843,2	MCF-7	breast:
12	chr8:91681994..91684402-chr8:91926496..91928050,2	MCF-7	breast:
13	chr8:91671956..91674475-chr8:91679710..91683408,3	K562	blood:
14	chr8:91670143..91672492-chr8:91681979..91683592,2	K562	blood:
15	chr8:91650893..91653020-chr8:91682221..91684113,2	K562	blood:
16	chr8:91682939..91685904-chr8:91705283..91708247,3	MCF-7	breast:
17	chr8:91682168..91683156-chr8:91704088..91704602,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NECAB1-4	chr8:91682715-91683097	NONHSAT127660

No data

Variant related genes	Relation type
ENSG00000246792	Chromatin interaction
ENSG00000180694	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10086155	0.82[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs10090406	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091274	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808625	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808626	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956763	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10956764	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10956765	0.81[CEU][hapmap]
rs10956770	0.81[CEU][hapmap]
rs10956776	0.82[CEU][hapmap]
rs10956777	0.82[CEU][hapmap]
rs1125502	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11777332	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12550194	0.81[CEU][hapmap]
rs12677100	0.88[JPT][hapmap]
rs13265863	0.81[CEU][hapmap]
rs13266461	0.80[JPT][hapmap]
rs1354516	0.81[CEU][hapmap]
rs1394503	0.82[CEU][hapmap]
rs1394505	0.82[CEU][hapmap]
rs1394509	0.81[CEU][hapmap]
rs1463916	0.82[CEU][hapmap]
rs1463917	0.82[CEU][hapmap]
rs1463918	0.81[CEU][hapmap]
rs1463919	0.81[CEU][hapmap]
rs1604915	0.81[CEU][hapmap]
rs16905145	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827668	0.82[CEU][hapmap]
rs1976495	0.81[CEU][hapmap]
rs2339228	0.81[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs2339229	0.82[ASN][1000 genomes]
rs2339230	0.81[CEU][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs28568272	0.80[ASN][1000 genomes]
rs34753356	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35547810	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236824	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4236827	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4236828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301409	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4330649	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4330650	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4332092	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335090	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4335091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4338064	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4376466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4377923	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4377924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4442097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4520126	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs4538831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4606020	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4637779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4642598	1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734296	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4735295	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4735306	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4735309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735341	0.82[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4735363	0.82[CEU][hapmap]
rs4735368	0.81[CEU][hapmap]
rs6471243	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs6471245	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6471248	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6471249	0.86[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6471251	0.82[CEU][hapmap]
rs6471252	0.82[CEU][hapmap]
rs6983827	0.80[CEU][hapmap]
rs6985723	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6993648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6994433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6997009	0.85[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs6998736	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7003026	0.86[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7008239	0.87[ASN][1000 genomes]
rs7009348	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7017260	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814682	0.81[CEU][hapmap]
rs7816709	0.82[CEU][hapmap]
rs7817599	0.82[CEU][hapmap]
rs7818125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7821994	0.83[ASN][1000 genomes]
rs7822742	0.86[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs7832679	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7835610	0.85[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7839617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840203	0.83[ASN][1000 genomes]
rs7845074	0.82[CEU][hapmap]
rs885497	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91679000-91683400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:91679000-91688000	Weak transcription	Aorta	Aorta
3	chr8:91680400-91683400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:91680600-91683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:91680600-91684400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:91680600-91689800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:91681000-91684600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:91681600-91684000	Enhancers	Fetal Heart	heart
9	chr8:91681600-91684000	Enhancers	HMEC	breast
10	chr8:91681600-91684200	Enhancers	Rectal Smooth Muscle	rectum
11	chr8:91681600-91684400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:91681800-91683400	Enhancers	HSMMtube	muscle
13	chr8:91681800-91684000	Enhancers	HSMM	muscle
14	chr8:91681800-91684200	Enhancers	Colon Smooth Muscle	Colon
15	chr8:91681800-91684400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:91682000-91684000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:91682000-91684200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:91682000-91684400	Enhancers	NHEK	skin
19	chr8:91682000-91685800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:91682200-91684000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:91682400-91683600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:91682600-91683200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr8:91682600-91683200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:91682600-91683200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:91682600-91683200	Enhancers	Brain Anterior Caudate	brain
26	chr8:91682600-91683200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:91682600-91683400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:91682600-91683400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr8:91682600-91683400	Enhancers	NHDF-Ad	bronchial
30	chr8:91682600-91683600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:91682600-91683800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:91682600-91683800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:91682600-91683800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:91682600-91683800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:91682600-91683800	Enhancers	Brain Angular Gyrus	brain
36	chr8:91682600-91683800	Enhancers	Brain Cingulate Gyrus	brain
37	chr8:91682600-91683800	Enhancers	Brain Hippocampus Middle	brain
38	chr8:91682600-91683800	Enhancers	Brain Substantia Nigra	brain
39	chr8:91682600-91683800	Enhancers	Fetal Lung	lung
40	chr8:91682600-91684000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr8:91682600-91684000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:91682600-91684000	Enhancers	Fetal Muscle Leg	muscle
43	chr8:91682600-91684000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr8:91682600-91684000	Enhancers	NHLF	lung
45	chr8:91682600-91684000	Enhancers	Osteobl	bone
46	chr8:91682600-91684400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:91682600-91684400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:91682800-91683200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr8:91682800-91683200	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr8:91682800-91683600	Enhancers	Fetal Kidney	kidney

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