The 2.0 version of rSNPBase

Variant report

Variant rs11574430
Chromosome Location chr3:46447554-46447555
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:46428000-46448400 Weak transcription Primary T cells from cord blood blood
2 chr3:46438800-46459800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr3:46439200-46448200 Weak transcription Left Ventricle heart
4 chr3:46439600-46448400 Weak transcription Psoas Muscle Psoas
5 chr3:46442400-46448400 Weak transcription HSMMtube muscle
6 chr3:46442600-46448200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr3:46443200-46448400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr3:46445000-46448200 Enhancers Fetal Intestine Large intestine
9 chr3:46445000-46448600 Enhancers Fetal Intestine Small intestine
10 chr3:46445000-46450000 Enhancers Spleen Spleen
11 chr3:46445800-46448600 Enhancers Primary monocytes fromperipheralblood blood
12 chr3:46446000-46448600 Enhancers Fetal Adrenal Gland Adrenal Gland
13 chr3:46446200-46447600 Enhancers Ovary ovary
14 chr3:46446200-46448200 Enhancers K562 blood
15 chr3:46446200-46448400 Enhancers Primary hematopoietic stem cells short term culture blood
16 chr3:46446200-46448600 Enhancers Primary neutrophils fromperipheralblood blood
17 chr3:46446200-46448600 Enhancers Duodenum Smooth Muscle Duodenum
18 chr3:46446200-46448600 Enhancers Right Atrium heart
19 chr3:46446200-46450200 Enhancers Fetal Lung lung
20 chr3:46446400-46447600 Enhancers Liver Liver
21 chr3:46446400-46447600 Flanking Active TSS Duodenum Mucosa Duodenum
22 chr3:46446400-46447800 Weak transcription Fetal Thymus thymus
23 chr3:46446400-46447800 Weak transcription Small Intestine intestine
24 chr3:46446400-46448600 Enhancers Primary B cells from cord blood blood
25 chr3:46446400-46448600 Enhancers Placenta Placenta
26 chr3:46446400-46448600 Enhancers HUVEC blood vessel
27 chr3:46446400-46448800 Enhancers Primary hematopoietic stem cells blood
28 chr3:46446400-46448800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
29 chr3:46446600-46448600 Flanking Active TSS Rectal Mucosa Donor 31 rectum
30 chr3:46446600-46448600 Enhancers Sigmoid Colon Sigmoid Colon
31 chr3:46446800-46447800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
32 chr3:46446800-46448000 Enhancers Skeletal Muscle Male skeletal muscle
33 chr3:46446800-46448200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr3:46446800-46448200 Enhancers Hela-S3 cervix
35 chr3:46446800-46448400 Enhancers Muscle Satellite Cultured Cells --
36 chr3:46446800-46448400 Weak transcription Brain Inferior Temporal Lobe brain
37 chr3:46446800-46448600 Enhancers Primary Natural Killer cells fromperipheralblood blood
38 chr3:46446800-46448600 Enhancers NHLF lung
39 chr3:46446800-46449000 Enhancers Pancreas Pancrea
40 chr3:46446800-46450600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
41 chr3:46447000-46447600 Bivalent Enhancer Fetal Muscle Leg muscle
42 chr3:46447000-46448000 Weak transcription Fetal Kidney kidney
43 chr3:46447000-46448400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr3:46447000-46448600 Enhancers Primary B cells from peripheral blood blood
45 chr3:46447000-46448600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr3:46447000-46448600 Enhancers Gastric stomach
47 chr3:46447000-46448600 Enhancers NHDF-Ad bronchial
48 chr3:46447200-46448000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr3:46447200-46448200 Enhancers Stomach Mucosa stomach
50 chr3:46447200-46448400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015