The 2.0 version of rSNPBase

Variant report

Variant rs6777875
Chromosome Location chr3:46425092-46425093
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:46420400-46425400 Weak transcription Brain Inferior Temporal Lobe brain
2 chr3:46420400-46427600 Weak transcription Pancreas Pancrea
3 chr3:46421400-46426000 Enhancers Fetal Lung lung
4 chr3:46422000-46425200 Enhancers Colonic Mucosa Colon
5 chr3:46422200-46425400 Enhancers Stomach Mucosa stomach
6 chr3:46422200-46435200 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr3:46422400-46425400 Weak transcription Thymus Thymus
8 chr3:46422400-46426400 Weak transcription H1 Cell Line embryonic stem cell
9 chr3:46422400-46427800 Weak transcription Esophagus oesophagus
10 chr3:46422400-46438600 Weak transcription Psoas Muscle Psoas
11 chr3:46422600-46427600 Weak transcription Hela-S3 cervix
12 chr3:46422600-46435200 Weak transcription Right Atrium heart
13 chr3:46422800-46429400 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr3:46423000-46425200 Weak transcription Primary T cells from cord blood blood
15 chr3:46423000-46425200 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr3:46423000-46425200 Weak transcription Primary T killer memory cells from peripheral blood blood
17 chr3:46423000-46425200 Weak transcription Liver Liver
18 chr3:46423000-46426400 Weak transcription HUES48 Cell Line embryonic stem cell
19 chr3:46423000-46427600 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr3:46423000-46427600 Weak transcription HSMM muscle
21 chr3:46423000-46427600 Weak transcription HSMMtube muscle
22 chr3:46423200-46425200 Enhancers Gastric stomach
23 chr3:46423400-46425800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr3:46423400-46427400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr3:46423800-46425200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr3:46423800-46427400 Weak transcription NHEK skin
27 chr3:46424200-46425400 Enhancers Primary B cells from cord blood blood
28 chr3:46424200-46425800 Enhancers Rectal Mucosa Donor 31 rectum
29 chr3:46424400-46425800 Enhancers Duodenum Mucosa Duodenum
30 chr3:46424400-46425800 Enhancers Sigmoid Colon Sigmoid Colon
31 chr3:46424400-46426800 Enhancers Primary Natural Killer cells fromperipheralblood blood
32 chr3:46424400-46427600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr3:46424400-46428200 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr3:46424400-46428200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr3:46424400-46428200 Enhancers Fetal Thymus thymus
36 chr3:46424400-46428800 Enhancers Primary hematopoietic stem cells blood
37 chr3:46424600-46425400 Enhancers Placenta Placenta
38 chr3:46424600-46425400 Enhancers Small Intestine intestine
39 chr3:46424600-46425600 Enhancers Adipose Nuclei Adipose
40 chr3:46424600-46425600 Enhancers Brain Angular Gyrus brain
41 chr3:46424600-46425800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr3:46424600-46425800 Enhancers Rectal Mucosa Donor 29 rectum
43 chr3:46424600-46426400 Enhancers Cortex derived primary cultured neurospheres brain
44 chr3:46424800-46425200 Weak transcription Brain Anterior Caudate brain
45 chr3:46424800-46425200 Enhancers Lung lung
46 chr3:46424800-46425400 Enhancers Brain Germinal Matrix brain
47 chr3:46424800-46425800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr3:46424800-46425800 Enhancers Primary T cells fromperipheralblood blood
49 chr3:46424800-46425800 Flanking Active TSS Dnd41 blood
50 chr3:46424800-46425800 Enhancers Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015