Variant report

Variant	rs35118578
Chromosome Location	chr3:46463884-46463885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46463233..46466298-chr3:46475344..46477775,3	K562	blood:
2	chr3:46463221..46464744-chr3:46469817..46472450,2	MCF-7	breast:
3	chr3:46420928..46423796-chr3:46462092..46464094,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11574430	0.95[ASN][1000 genomes]
rs11574436	0.95[ASN][1000 genomes]
rs11574442	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11575062	0.86[ASN][1000 genomes]
rs17141079	0.86[ASN][1000 genomes]
rs17141101	0.95[ASN][1000 genomes]
rs17285143	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17715106	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17765882	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17782551	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782618	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782636	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1894387	0.86[ASN][1000 genomes]
rs1894388	0.81[ASN][1000 genomes]
rs2097285	0.88[EUR][1000 genomes]
rs2157052	0.84[EUR][1000 genomes]
rs2157053	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2157054	0.81[EUR][1000 genomes]
rs2157055	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2373245	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2373250	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2373251	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2856762	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3092957	0.86[ASN][1000 genomes]
rs3092958	0.86[ASN][1000 genomes]
rs3092959	0.86[ASN][1000 genomes]
rs3181038	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3204850	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34024447	0.86[ASN][1000 genomes]
rs34041956	0.86[ASN][1000 genomes]
rs34106161	0.86[ASN][1000 genomes]
rs34158148	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34180919	0.82[ASN][1000 genomes]
rs34190223	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34200951	0.91[ASN][1000 genomes]
rs34203322	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34245951	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34265215	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34351442	0.82[ASN][1000 genomes]
rs34363105	0.86[ASN][1000 genomes]
rs34448949	0.86[ASN][1000 genomes]
rs34455547	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34473395	0.86[ASN][1000 genomes]
rs34578126	0.82[ASN][1000 genomes]
rs34671664	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34709208	0.82[ASN][1000 genomes]
rs34883716	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34953706	0.86[ASN][1000 genomes]
rs34988015	0.82[ASN][1000 genomes]
rs34997818	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35148665	0.82[ASN][1000 genomes]
rs35260614	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35367413	0.86[ASN][1000 genomes]
rs35386789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35413141	0.86[ASN][1000 genomes]
rs35438577	0.82[ASN][1000 genomes]
rs35479331	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35513549	0.86[ASN][1000 genomes]
rs35516519	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35568430	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35577626	0.82[ASN][1000 genomes]
rs35601704	0.86[ASN][1000 genomes]
rs35821444	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35878193	0.91[ASN][1000 genomes]
rs35883833	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35943069	0.86[ASN][1000 genomes]
rs36020695	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36030692	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36052732	0.86[ASN][1000 genomes]
rs3749461	0.86[ASN][1000 genomes]
rs3918354	0.86[ASN][1000 genomes]
rs3918362	0.86[ASN][1000 genomes]
rs3918365	0.82[ASN][1000 genomes]
rs6777875	0.86[ASN][1000 genomes]
rs6806951	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71327048	0.82[ASN][1000 genomes]
rs71327052	0.86[ASN][1000 genomes]
rs71327053	0.86[ASN][1000 genomes]
rs71327054	0.86[ASN][1000 genomes]
rs71327055	0.86[ASN][1000 genomes]
rs71327056	0.86[ASN][1000 genomes]
rs71327057	0.86[ASN][1000 genomes]
rs71327059	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs71327061	0.86[ASN][1000 genomes]
rs71327062	0.91[ASN][1000 genomes]
rs71327063	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71327065	0.82[ASN][1000 genomes]
rs71615445	0.86[ASN][1000 genomes]
rs9714000	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46455800-46496800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:46456600-46469400	Weak transcription	Right Atrium	heart
3	chr3:46458400-46464000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:46458600-46469400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:46459000-46465600	Strong transcription	Spleen	Spleen
6	chr3:46459400-46465000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:46459400-46468600	Weak transcription	Fetal Intestine Small	intestine
8	chr3:46459400-46491600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:46459600-46464800	Weak transcription	Left Ventricle	heart
10	chr3:46460200-46464800	Weak transcription	Right Ventricle	heart
11	chr3:46460200-46477000	Weak transcription	Pancreas	Pancrea
12	chr3:46461800-46477000	Weak transcription	Gastric	stomach
13	chr3:46462800-46467800	Weak transcription	Fetal Heart	heart
14	chr3:46463000-46464000	Weak transcription	Stomach Mucosa	stomach
15	chr3:46463800-46464600	Enhancers	K562	blood
16	chr3:46463800-46464800	Enhancers	HSMMtube	muscle
17	chr3:46463800-46465400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:46463800-46465400	Enhancers	Lung	lung
19	chr3:46463800-46465800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:46463800-46466000	Enhancers	HMEC	breast
21	chr3:46463800-46466000	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links