Variant report

Variant	rs35883833
Chromosome Location	chr3:46474992-46474993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11574430	0.95[ASN][1000 genomes]
rs11574436	0.95[ASN][1000 genomes]
rs11574442	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11575062	0.85[ASN][1000 genomes]
rs17141079	0.85[ASN][1000 genomes]
rs17141101	0.95[ASN][1000 genomes]
rs17285143	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17715106	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17765882	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17782551	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782618	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17782636	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1894387	0.85[ASN][1000 genomes]
rs1894388	0.80[ASN][1000 genomes]
rs2097285	0.82[EUR][1000 genomes]
rs2157052	0.83[EUR][1000 genomes]
rs2157053	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2157055	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373245	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373250	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2373251	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2856762	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3092957	0.85[ASN][1000 genomes]
rs3092958	0.85[ASN][1000 genomes]
rs3092959	0.85[ASN][1000 genomes]
rs3181038	0.85[ASN][1000 genomes]
rs3204850	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34024447	0.85[ASN][1000 genomes]
rs34041956	0.85[ASN][1000 genomes]
rs34106161	0.85[ASN][1000 genomes]
rs34158148	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34180919	0.81[ASN][1000 genomes]
rs34190223	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34200951	0.91[ASN][1000 genomes]
rs34203322	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34245951	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34265215	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34351442	0.81[ASN][1000 genomes]
rs34363105	0.85[ASN][1000 genomes]
rs34448949	0.85[ASN][1000 genomes]
rs34455547	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34473395	0.85[ASN][1000 genomes]
rs34578126	0.81[ASN][1000 genomes]
rs34671664	1.00[ASN][1000 genomes]
rs34709208	0.81[ASN][1000 genomes]
rs34883716	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34953706	0.85[ASN][1000 genomes]
rs34988015	0.81[ASN][1000 genomes]
rs34997818	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35118578	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35148665	0.81[ASN][1000 genomes]
rs35260614	0.85[ASN][1000 genomes]
rs35367413	0.85[ASN][1000 genomes]
rs35386789	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35413141	0.85[ASN][1000 genomes]
rs35438577	0.81[ASN][1000 genomes]
rs35479331	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35513549	0.85[ASN][1000 genomes]
rs35516519	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35568430	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35577626	0.81[ASN][1000 genomes]
rs35601704	0.85[ASN][1000 genomes]
rs35821444	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35878193	0.91[ASN][1000 genomes]
rs35943069	0.85[ASN][1000 genomes]
rs36020695	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030692	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052732	0.85[ASN][1000 genomes]
rs3749461	0.85[ASN][1000 genomes]
rs3918354	0.85[ASN][1000 genomes]
rs3918362	0.85[ASN][1000 genomes]
rs3918365	0.81[ASN][1000 genomes]
rs6777875	0.85[ASN][1000 genomes]
rs6806951	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71327048	0.81[ASN][1000 genomes]
rs71327052	0.85[ASN][1000 genomes]
rs71327053	0.85[ASN][1000 genomes]
rs71327054	0.85[ASN][1000 genomes]
rs71327055	0.85[ASN][1000 genomes]
rs71327056	0.85[ASN][1000 genomes]
rs71327057	0.85[ASN][1000 genomes]
rs71327059	0.85[ASN][1000 genomes]
rs71327061	0.85[ASN][1000 genomes]
rs71327062	0.91[ASN][1000 genomes]
rs71327063	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327065	0.91[ASN][1000 genomes]
rs71615445	0.85[ASN][1000 genomes]
rs9714000	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46455800-46496800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:46459400-46491600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:46460200-46477000	Weak transcription	Pancreas	Pancrea
4	chr3:46461800-46477000	Weak transcription	Gastric	stomach
5	chr3:46465200-46488800	Weak transcription	Left Ventricle	heart
6	chr3:46465200-46488800	Weak transcription	Right Ventricle	heart
7	chr3:46469800-46477200	Weak transcription	Adipose Nuclei	Adipose
8	chr3:46472200-46475000	Weak transcription	Fetal Intestine Large	intestine
9	chr3:46474000-46475200	Enhancers	Dnd41	blood
10	chr3:46474200-46475000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:46474200-46475200	Enhancers	K562	blood
12	chr3:46474400-46475600	Enhancers	HMEC	breast
13	chr3:46474400-46477400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr3:46474600-46475200	Enhancers	NHEK	skin
15	chr3:46474600-46476800	Weak transcription	Primary T cells from cord blood	blood
16	chr3:46474600-46480600	Strong transcription	Spleen	Spleen
17	chr3:46474800-46475400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:46474800-46475400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:46474800-46476000	Enhancers	Placenta	Placenta
20	chr3:46474800-46480400	Weak transcription	Thymus	Thymus
21	chr3:46474800-46481800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links