Variant report

Variant	rs11871902
Chromosome Location	chr17:16988450-16988451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16944252..16948072-chr17:16988311..16992318,5	MCF-7	breast:
2	chr17:16980073..16983880-chr17:16986136..16989285,4	MCF-7	breast:
3	chr17:16984318..16990325-chr17:16990439..16995530,6	K562	blood:

Variant related genes	Relation type
ENSG00000225442	Chromatin interaction
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10852847	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11078374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11656868	1.00[CHB][hapmap]
rs2090018	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271520	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349646	1.00[ASN][1000 genomes]
rs28461224	1.00[ASN][1000 genomes]
rs4247118	0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4275914	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985696	1.00[ASN][1000 genomes]
rs4985701	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985702	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985717	1.00[ASN][1000 genomes]
rs4985718	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4985740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985746	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4985778	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502563	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7206981	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7208929	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208973	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7220827	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7221842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7222311	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064550	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072184	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8073842	1.00[CHB][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8079563	1.00[CHB][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9893911	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898995	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914671	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
2	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:16973600-16997600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr17:16974000-16995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr17:16977200-16991200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr17:16977400-16992400	Strong transcription	Hela-S3	cervix
7	chr17:16978600-16991000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:16978800-16996800	Strong transcription	Dnd41	blood
9	chr17:16979000-16988600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr17:16979000-16989000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:16979200-16991400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:16979400-16990000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:16979400-16991200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr17:16979400-16991400	Strong transcription	Primary T cells from cord blood	blood
15	chr17:16979600-16989000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr17:16979600-16989400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr17:16979800-16992200	Strong transcription	Thymus	Thymus
18	chr17:16981600-16991600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr17:16981600-16995000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:16981600-16995400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr17:16981800-16990200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr17:16981800-16990600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr17:16981800-16992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr17:16981800-16995400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:16982000-16990600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:16982000-16995400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr17:16982000-16995400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr17:16982000-16995600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr17:16982600-16990400	Weak transcription	Brain Germinal Matrix	brain
30	chr17:16982600-16990600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr17:16982800-16989400	Strong transcription	HMEC	breast
32	chr17:16982800-16995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr17:16983000-16996400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr17:16983400-16995400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr17:16983800-16989400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr17:16984400-16989800	Weak transcription	Psoas Muscle	Psoas
37	chr17:16984800-16989400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr17:16985000-16989400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr17:16985000-16989600	Strong transcription	A549	lung
40	chr17:16985000-16990200	Weak transcription	Fetal Heart	heart
41	chr17:16985000-16990400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr17:16985000-16990800	Weak transcription	Brain Substantia Nigra	brain
43	chr17:16985000-16991800	Weak transcription	Colonic Mucosa	Colon
44	chr17:16985200-16988600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr17:16985200-16989400	Weak transcription	Left Ventricle	heart
46	chr17:16985200-16989800	Weak transcription	Colon Smooth Muscle	Colon
47	chr17:16985200-16989800	Strong transcription	Osteobl	bone
48	chr17:16985200-16990000	Weak transcription	Right Atrium	heart
49	chr17:16985200-16991800	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr17:16985200-16992000	Weak transcription	Small Intestine	intestine

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