Variant report

Variant	rs7221842
Chromosome Location	chr17:16957827-16957828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16945045..16948831-chr17:16956136..16958119,4	MCF-7	breast:
2	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
3	chr17:16956089..16958847-chr17:16968316..16970450,3	K562	blood:
4	chr17:16955910..16958218-chr17:16967140..16970023,2	MCF-7	breast:
5	chr17:16944864..16947306-chr17:16957619..16959677,4	MCF-7	breast:
6	chr17:16955891..16957915-chr17:16961428..16963448,2	K562	blood:
7	chr17:16953007..16956653-chr17:16956657..16959834,3	MCF-7	breast:
8	chr17:16956631..16959260-chr17:16983096..16985186,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10852847	1.00[CHB][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11078374	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656868	1.00[CHB][hapmap]
rs11871902	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1974721	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2090018	1.00[ASN][1000 genomes]
rs2271520	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2349646	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28461224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247118	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4247120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4275914	1.00[ASN][1000 genomes]
rs4514740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985696	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985701	1.00[ASN][1000 genomes]
rs4985702	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985717	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985746	1.00[ASN][1000 genomes]
rs4985778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6502563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7206981	1.00[ASN][1000 genomes]
rs7207485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7208929	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7208973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7217091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7222311	1.00[ASN][1000 genomes]
rs8064550	1.00[ASN][1000 genomes]
rs8072184	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8079563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9893911	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9898995	1.00[ASN][1000 genomes]
rs9908767	1.00[ASN][1000 genomes]
rs9914671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
8	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr17:16949000-16975200	Weak transcription	K562	blood
10	chr17:16950200-16962600	Weak transcription	Dnd41	blood
11	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
12	chr17:16951000-16958800	Enhancers	Right Ventricle	heart
13	chr17:16952000-16958400	Weak transcription	Aorta	Aorta
14	chr17:16952600-16960000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
16	chr17:16953600-16960600	Enhancers	Left Ventricle	heart
17	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
18	chr17:16953800-16958200	Enhancers	Pancreas	Pancrea
19	chr17:16953800-16958800	Genic enhancers	Fetal Muscle Leg	muscle
20	chr17:16953800-16959200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:16953800-16959200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr17:16953800-16959600	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr17:16953800-16960400	Enhancers	Ovary	ovary
24	chr17:16953800-16960800	Enhancers	Spleen	Spleen
25	chr17:16953800-16961000	Enhancers	Right Atrium	heart
26	chr17:16953800-16961800	Genic enhancers	A549	lung
27	chr17:16954200-16961000	Enhancers	Stomach Mucosa	stomach
28	chr17:16954200-16962200	Genic enhancers	Fetal Stomach	stomach
29	chr17:16954800-16958400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr17:16955200-16958400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr17:16955400-16958000	Strong transcription	Hela-S3	cervix
33	chr17:16955400-16958600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr17:16955400-16958800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr17:16955400-16970200	Weak transcription	NH-A	brain
36	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr17:16955600-16958600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr17:16955600-16958800	Genic enhancers	Osteobl	bone
39	chr17:16956000-16958000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr17:16956000-16958800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr17:16956200-16958600	Weak transcription	HSMM	muscle
42	chr17:16956200-16959600	Weak transcription	Brain Germinal Matrix	brain
43	chr17:16956400-16958600	Weak transcription	Brain Angular Gyrus	brain
44	chr17:16956400-16959000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr17:16956400-16959400	Enhancers	Adipose Nuclei	Adipose
46	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr17:16956600-16958400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr17:16956600-16958400	Weak transcription	HUVEC	blood vessel
49	chr17:16956600-16960000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr17:16956600-16960800	Weak transcription	HepG2	liver

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