Variant report

Variant	rs7222311
Chromosome Location	chr17:16954103-16954104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
2	chr17:16953800..16956981-chr17:16958258..16961708,4	MCF-7	breast:
3	chr17:16948833..16952528-chr17:16954016..16957501,7	K562	blood:
4	chr17:16944176..16948439-chr17:16950883..16955441,5	K562	blood:
5	chr17:16943909..16948439-chr17:16949478..16955691,9	K562	blood:
6	chr17:16953007..16956653-chr17:16956657..16959834,3	MCF-7	breast:
7	chr17:16953727..16956148-chr17:16980520..16983644,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction
ENSG00000225442	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10852847	1.00[ASN][1000 genomes]
rs11078374	1.00[ASN][1000 genomes]
rs11871902	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090018	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271520	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349646	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28461224	1.00[ASN][1000 genomes]
rs4247118	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247120	1.00[ASN][1000 genomes]
rs4275914	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514740	1.00[ASN][1000 genomes]
rs4985696	1.00[ASN][1000 genomes]
rs4985701	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985702	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985717	1.00[ASN][1000 genomes]
rs4985718	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4985740	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4985746	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4985778	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502563	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7206981	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207485	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7208929	0.99[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208973	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217091	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7221842	1.00[ASN][1000 genomes]
rs8064550	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072184	1.00[ASN][1000 genomes]
rs8073842	1.00[ASN][1000 genomes]
rs8079563	1.00[ASN][1000 genomes]
rs9893911	0.99[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898995	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908767	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914671	1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:16947800-16955200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:16949000-16954200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr17:16949000-16954600	Weak transcription	Gastric	stomach
9	chr17:16949000-16954800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:16949000-16955000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr17:16949000-16955000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:16949000-16956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr17:16949000-16956200	Weak transcription	Fetal Brain Female	brain
14	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
15	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
17	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr17:16949000-16975200	Weak transcription	K562	blood
19	chr17:16949200-16954800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr17:16949200-16955000	Weak transcription	NH-A	brain
21	chr17:16949600-16954800	Weak transcription	HUVEC	blood vessel
22	chr17:16950200-16955800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr17:16950200-16955800	Weak transcription	Brain Germinal Matrix	brain
24	chr17:16950200-16962600	Weak transcription	Dnd41	blood
25	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
26	chr17:16950600-16955400	Genic enhancers	Hela-S3	cervix
27	chr17:16951000-16957200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr17:16951000-16958800	Enhancers	Right Ventricle	heart
29	chr17:16951200-16957800	Enhancers	Brain Anterior Caudate	brain
30	chr17:16951600-16954800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr17:16951800-16954200	Weak transcription	Stomach Mucosa	stomach
32	chr17:16951800-16954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr17:16952000-16954400	Weak transcription	Primary T cells from cord blood	blood
34	chr17:16952000-16955000	Weak transcription	HSMMtube	muscle
35	chr17:16952000-16958400	Weak transcription	Aorta	Aorta
36	chr17:16952600-16960000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
38	chr17:16952800-16954600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr17:16952800-16957000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:16953600-16954400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr17:16953600-16954600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr17:16953600-16955000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr17:16953600-16955000	Enhancers	HSMM	muscle
44	chr17:16953600-16955400	Enhancers	Adipose Nuclei	Adipose
45	chr17:16953600-16957200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr17:16953600-16957200	Genic enhancers	Fetal Intestine Small	intestine
47	chr17:16953600-16960600	Enhancers	Left Ventricle	heart
48	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr17:16953800-16954200	Strong transcription	Fetal Stomach	stomach
50	chr17:16953800-16954200	Genic enhancers	Rectal Smooth Muscle	rectum

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