Variant report

Variant	rs9898995
Chromosome Location	chr17:16970658-16970659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16961533..16963190-chr17:16969814..16972277,2	MCF-7	breast:
2	chr17:16963589..16966121-chr17:16969221..16970964,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10852847	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11078374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11656868	1.00[CHB][hapmap]
rs11871902	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090018	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271520	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2349646	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28461224	1.00[ASN][1000 genomes]
rs4247118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4275914	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985696	1.00[ASN][1000 genomes]
rs4985701	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985717	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4985718	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4985740	1.00[CHB][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4985746	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4985778	1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7206981	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207485	1.00[CHB][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7208929	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217091	1.00[CHB][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7220827	1.00[CHB][hapmap]
rs7221842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7222311	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064550	0.93[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072184	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8073842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8079563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9893911	0.99[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908767	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9914671	1.00[ASN][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16975200	Weak transcription	K562	blood
2	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
3	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:16956400-16972600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr17:16959400-16972800	Weak transcription	HUVEC	blood vessel
8	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr17:16960800-16976400	Weak transcription	Aorta	Aorta
11	chr17:16961600-16977200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr17:16964400-16973600	Weak transcription	HepG2	liver
13	chr17:16964400-16974200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:16965000-16975400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr17:16965200-16973000	Weak transcription	GM12878-XiMat	blood
16	chr17:16966200-16980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr17:16966400-16973400	Weak transcription	Fetal Brain Female	brain
18	chr17:16966400-16975000	Weak transcription	Brain Germinal Matrix	brain
19	chr17:16966800-16975600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:16967000-16973200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr17:16967200-16972800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:16967200-16974200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr17:16967200-16974200	Weak transcription	Dnd41	blood
24	chr17:16967400-16973000	Weak transcription	Primary B cells from cord blood	blood
25	chr17:16967400-16974200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr17:16967400-16974200	Weak transcription	Gastric	stomach
27	chr17:16967400-16974200	Weak transcription	Thymus	Thymus
28	chr17:16967400-16974400	Weak transcription	Placenta	Placenta
29	chr17:16967400-16974600	Weak transcription	Fetal Thymus	thymus
30	chr17:16967400-16975000	Weak transcription	Colonic Mucosa	Colon
31	chr17:16967400-16975400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr17:16967600-16973400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr17:16967600-16974200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr17:16967600-16974200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:16967600-16974200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr17:16967800-16974200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:16967800-16974200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr17:16968000-16973600	Weak transcription	Small Intestine	intestine
39	chr17:16968000-16974200	Weak transcription	Esophagus	oesophagus
40	chr17:16968000-16974200	Weak transcription	Fetal Stomach	stomach
41	chr17:16968000-16974200	Weak transcription	Right Atrium	heart
42	chr17:16968000-16974600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr17:16968000-16976600	Weak transcription	NHDF-Ad	bronchial
44	chr17:16968000-16977000	Weak transcription	Colon Smooth Muscle	Colon
45	chr17:16968200-16970800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr17:16968200-16973000	Weak transcription	Fetal Lung	lung
47	chr17:16968200-16974000	Weak transcription	Liver	Liver
48	chr17:16968200-16974200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr17:16968200-16974200	Weak transcription	Spleen	Spleen
50	chr17:16968200-16974600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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