The 2.0 version of rSNPBase

Variant report

Variant rs28461224
Chromosome Location chr17:17078017-17078018
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:17029800-17088400 Strong transcription Dnd41 blood
2 chr17:17030000-17088000 Strong transcription Duodenum Mucosa Duodenum
3 chr17:17030400-17079200 Strong transcription Sigmoid Colon Sigmoid Colon
4 chr17:17030400-17089200 Strong transcription Fetal Intestine Large intestine
5 chr17:17031000-17078800 Strong transcription Rectal Mucosa Donor 29 rectum
6 chr17:17038400-17093800 Strong transcription Fetal Brain Female brain
7 chr17:17044200-17083600 Strong transcription Thymus Thymus
8 chr17:17045000-17088400 Strong transcription Brain Germinal Matrix brain
9 chr17:17045200-17093800 Strong transcription Fetal Stomach stomach
10 chr17:17051000-17093200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr17:17053200-17088200 Strong transcription Gastric stomach
12 chr17:17054800-17087000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr17:17055200-17089400 Strong transcription Rectal Mucosa Donor 31 rectum
14 chr17:17055600-17092600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr17:17055800-17092600 Strong transcription Cortex derived primary cultured neurospheres brain
16 chr17:17056000-17093600 Strong transcription Primary hematopoietic stem cells short term culture blood
17 chr17:17056200-17084400 Strong transcription Aorta Aorta
18 chr17:17056200-17088200 Strong transcription Duodenum Smooth Muscle Duodenum
19 chr17:17056200-17092400 Strong transcription Stomach Smooth Muscle stomach
20 chr17:17056400-17078800 Strong transcription Monocytes-CD14+_RO01746 blood
21 chr17:17056400-17082400 Strong transcription Rectal Smooth Muscle rectum
22 chr17:17056600-17078800 Strong transcription Primary monocytes fromperipheralblood blood
23 chr17:17056600-17084000 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr17:17056600-17093600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr17:17056800-17095000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr17:17059400-17089000 Strong transcription A549 lung
27 chr17:17060400-17088200 Strong transcription HSMM muscle
28 chr17:17060400-17093400 Strong transcription Liver Liver
29 chr17:17060600-17088800 Strong transcription Fetal Intestine Small intestine
30 chr17:17060600-17089200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr17:17060800-17089000 Strong transcription NHLF lung
32 chr17:17060800-17089400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr17:17060800-17093600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr17:17061400-17083600 Strong transcription Esophagus oesophagus
35 chr17:17061400-17085200 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr17:17061400-17089000 Strong transcription Osteobl bone
37 chr17:17061400-17090200 Strong transcription Muscle Satellite Cultured Cells --
38 chr17:17062800-17085400 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr17:17064800-17083000 Weak transcription Pancreatic Islets Pancreatic Islet
40 chr17:17067800-17092200 Strong transcription Brain Cingulate Gyrus brain
41 chr17:17069000-17079000 Strong transcription GM12878-XiMat blood
42 chr17:17070600-17078400 Weak transcription Small Intestine intestine
43 chr17:17071200-17082200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr17:17071200-17082800 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
45 chr17:17071600-17078600 Genic enhancers Primary T helper naive cells fromperipheralblood blood
46 chr17:17071600-17082800 Genic enhancers Primary T cells fromperipheralblood blood
47 chr17:17071800-17087800 Strong transcription NH-A brain
48 chr17:17072200-17081800 Strong transcription Hela-S3 cervix
49 chr17:17073200-17079600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
50 chr17:17073800-17079000 Genic enhancers Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015