Variant report

Variant	rs7208929
Chromosome Location	chr17:16974408-16974409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16973848..16977843-chr17:17007115..17009088,3	K562	blood:
2	chr17:16961416..16963930-chr17:16973048..16975828,2	MCF-7	breast:
3	chr17:16966782..16968541-chr17:16972398..16974708,2	MCF-7	breast:
4	chr17:16944012..16948651-chr17:16974298..16979165,8	MCF-7	breast:
5	chr17:16973153..16975478-chr17:16980179..16983152,3	MCF-7	breast:
6	chr17:16960541..16963488-chr17:16973669..16975731,3	MCF-7	breast:
7	chr17:16973117..16976449-chr17:16977265..16979682,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225442	Chromatin interaction
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10852847	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11078374	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11656868	1.00[CHB][hapmap]
rs11867934	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11871902	1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12939385	0.80[YRI][hapmap]
rs1974721	0.80[AMR][1000 genomes]
rs2090018	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2271520	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2349646	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28461224	1.00[ASN][1000 genomes]
rs4247118	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4247120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4275914	1.00[ASN][1000 genomes]
rs4514740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985696	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4985701	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4985702	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4985717	1.00[ASN][1000 genomes]
rs4985718	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4985740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985746	1.00[ASN][1000 genomes]
rs4985778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6502563	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7206981	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7207485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208973	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7217091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7220827	1.00[CHB][hapmap]
rs7221842	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7222311	0.99[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064550	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8072184	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8073842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8079563	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9893911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898995	0.99[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908767	1.00[ASN][1000 genomes]
rs9914671	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16949000-16975200	Weak transcription	K562	blood
2	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
3	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:16959200-16982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:16959600-16979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr17:16959600-16992000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr17:16960800-16976400	Weak transcription	Aorta	Aorta
9	chr17:16961600-16977200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr17:16965000-16975400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr17:16966200-16980800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:16966400-16975000	Weak transcription	Brain Germinal Matrix	brain
13	chr17:16966800-16975600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:16967400-16974600	Weak transcription	Fetal Thymus	thymus
15	chr17:16967400-16975000	Weak transcription	Colonic Mucosa	Colon
16	chr17:16967400-16975400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:16968000-16974600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr17:16968000-16976600	Weak transcription	NHDF-Ad	bronchial
19	chr17:16968000-16977000	Weak transcription	Colon Smooth Muscle	Colon
20	chr17:16968200-16974600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr17:16968200-16975200	Weak transcription	Fetal Heart	heart
22	chr17:16969400-16974800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr17:16970000-16981000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr17:16970800-16975000	Weak transcription	Pancreas	Pancrea
25	chr17:16970800-16976800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr17:16970800-16977000	Weak transcription	HSMMtube	muscle
27	chr17:16970800-16980400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:16971000-16976200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr17:16971000-16976400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr17:16971000-16976800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr17:16971000-16977200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr17:16971000-16979000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr17:16972200-16975000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:16973000-16981000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr17:16973000-16981200	Enhancers	Brain Anterior Caudate	brain
36	chr17:16973200-16985000	Genic enhancers	A549	lung
37	chr17:16973400-16974800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr17:16973400-16981400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr17:16973600-16974800	Enhancers	HepG2	liver
40	chr17:16973600-16975000	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr17:16973600-16975200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr17:16973600-16976200	Enhancers	Small Intestine	intestine
43	chr17:16973600-16979800	Genic enhancers	HSMM	muscle
44	chr17:16973600-16980000	Genic enhancers	HMEC	breast
45	chr17:16973600-16997600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr17:16973800-16974800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr17:16973800-16976800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr17:16973800-16977200	Weak transcription	HUVEC	blood vessel
49	chr17:16973800-16978200	Enhancers	Stomach Mucosa	stomach
50	chr17:16973800-16978200	Weak transcription	GM12878-XiMat	blood

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