Variant report

Variant	rs9914671
Chromosome Location	chr17:17002531-17002532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17001973..17004582-chr17:17006426..17009352,2	MCF-7	breast:
2	chr17:16992481..16994529-chr17:17001211..17003120,2	MCF-7	breast:
3	chr17:17000263..17003828-chr17:17006059..17008926,3	MCF-7	breast:
4	chr17:16989031..16991528-chr17:17000273..17002775,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10852847	1.00[CHB][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11078374	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656868	1.00[CHB][hapmap]
rs11871902	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1974721	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2090018	1.00[ASN][1000 genomes]
rs2271520	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2349646	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28461224	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247118	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4247120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4275914	1.00[ASN][1000 genomes]
rs4514740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985701	1.00[ASN][1000 genomes]
rs4985702	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985717	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4985740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4985746	1.00[ASN][1000 genomes]
rs4985778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6502563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7206981	1.00[ASN][1000 genomes]
rs7207485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7208929	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7208973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7217091	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7220827	1.00[CHB][hapmap]
rs7221842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222311	1.00[ASN][1000 genomes]
rs8064550	1.00[ASN][1000 genomes]
rs8072184	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073842	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8079563	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9893911	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9898995	1.00[ASN][1000 genomes]
rs9908767	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
2	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
4	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:16994600-17003400	Enhancers	Ovary	ovary
6	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:16996400-17006200	Weak transcription	Liver	Liver
8	chr17:16997000-17016600	Enhancers	Left Ventricle	heart
9	chr17:16997200-17005000	Weak transcription	K562	blood
10	chr17:16997400-17006200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:16997400-17010000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:16998000-17003600	Genic enhancers	Fetal Stomach	stomach
13	chr17:16998200-17002800	Enhancers	NHDF-Ad	bronchial
14	chr17:16998200-17016200	Enhancers	Fetal Heart	heart
15	chr17:16998400-17002600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:16998400-17002600	Enhancers	Stomach Mucosa	stomach
17	chr17:16998600-17002600	Enhancers	Brain Substantia Nigra	brain
18	chr17:16998600-17002800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:16998600-17003800	Enhancers	Right Atrium	heart
20	chr17:16998600-17004000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:16998600-17006800	Enhancers	Psoas Muscle	Psoas
22	chr17:16998600-17015400	Genic enhancers	Fetal Muscle Leg	muscle
23	chr17:16998600-17016600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr17:16998800-17003000	Enhancers	Brain Cingulate Gyrus	brain
25	chr17:16999000-17002800	Genic enhancers	Duodenum Mucosa	Duodenum
26	chr17:16999000-17012800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr17:16999200-17002600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr17:16999200-17002600	Enhancers	Brain Angular Gyrus	brain
29	chr17:16999200-17002800	Genic enhancers	Brain Hippocampus Middle	brain
30	chr17:16999200-17003000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr17:16999200-17006400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr17:16999400-17002600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr17:16999400-17002800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr17:16999400-17002800	Enhancers	Brain Anterior Caudate	brain
35	chr17:16999400-17002800	Enhancers	NHLF	lung
36	chr17:16999400-17003000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:16999600-17002600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr17:16999600-17003600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr17:16999600-17005000	Weak transcription	Gastric	stomach
40	chr17:16999600-17008200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr17:16999800-17002600	Genic enhancers	Osteobl	bone
42	chr17:16999800-17003000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr17:17000200-17002600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr17:17000200-17002600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr17:17000200-17002600	Enhancers	HSMMtube	muscle
46	chr17:17000200-17005600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr17:17000200-17012600	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr17:17000200-17018200	Weak transcription	NH-A	brain
49	chr17:17000400-17003400	Weak transcription	Spleen	Spleen
50	chr17:17000400-17004000	Enhancers	Fetal Lung	lung

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