Variant report

Variant	rs12055156
Chromosome Location	chr5:146905987-146905988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10463277	0.97[EUR][1000 genomes]
rs10463278	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1126014	0.99[EUR][1000 genomes]
rs11949718	0.99[EUR][1000 genomes]
rs11951211	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11953038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108716	0.99[EUR][1000 genomes]
rs12109947	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432847	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1594660	0.83[ASN][1000 genomes]
rs17106850	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650890	0.99[EUR][1000 genomes]
rs1897560	0.83[ASN][1000 genomes]
rs1897561	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34055697	0.83[ASN][1000 genomes]
rs34506199	0.83[ASN][1000 genomes]
rs35983616	0.83[ASN][1000 genomes]
rs41410444	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41506250	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6580470	0.91[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs66795022	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67406727	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67599220	0.97[EUR][1000 genomes]
rs68165938	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871170	0.97[EUR][1000 genomes]
rs6876990	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6877330	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72833384	0.99[EUR][1000 genomes]
rs72833394	0.97[EUR][1000 genomes]
rs72833397	0.97[EUR][1000 genomes]
rs72833398	0.97[EUR][1000 genomes]
rs72833399	0.97[EUR][1000 genomes]
rs72833401	0.97[EUR][1000 genomes]
rs7713359	0.90[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715946	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7716144	0.99[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146903200-146910200	Weak transcription	NHLF	lung
2	chr5:146903400-146907200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:146903800-146910200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:146905400-146906600	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links