Variant report

Variant	rs17106850
Chromosome Location	chr5:146906766-146906767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10463277	0.97[EUR][1000 genomes]
rs10463278	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1126014	0.99[EUR][1000 genomes]
rs11949718	0.99[EUR][1000 genomes]
rs11951211	0.89[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11953038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055156	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108716	0.99[EUR][1000 genomes]
rs12109947	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1432846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1432847	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1594660	0.83[ASN][1000 genomes]
rs17650890	0.99[EUR][1000 genomes]
rs1897560	0.83[ASN][1000 genomes]
rs1897561	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34055697	0.83[ASN][1000 genomes]
rs34506199	0.83[ASN][1000 genomes]
rs35983616	0.83[ASN][1000 genomes]
rs41410444	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41506250	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6580470	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs66795022	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67406727	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67599220	0.97[EUR][1000 genomes]
rs68165938	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871170	0.97[EUR][1000 genomes]
rs6876990	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6877330	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72833384	0.99[EUR][1000 genomes]
rs72833394	0.97[EUR][1000 genomes]
rs72833397	0.97[EUR][1000 genomes]
rs72833398	0.97[EUR][1000 genomes]
rs72833399	0.97[EUR][1000 genomes]
rs72833401	0.97[EUR][1000 genomes]
rs7713359	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715946	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7716144	0.99[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17106850	SH3TC2	cis	cerebellum	SCAN
rs17106850	POU4F3	cis	parietal	SCAN
rs17106850	CA2	trans	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146903200-146910200	Weak transcription	NHLF	lung
2	chr5:146903400-146907200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:146903800-146910200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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